| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|---|
| 1. | MligTC455_32147 | 160 | 3.33 | Mlig455_010112, Mlig455_010113, Mlig455_013379, Mlig455_016482, Mlig455_040910, Mlig455_063010, Mlig455_063011, Mlig455_066077, Mlig455_066119 | Neo: Germline Age: Up-Down-Down |
RTL1 | Mlig455_010112 {REF} {Length: 1290} {Pfam: Integrase core domain [PF00665.28, score=30.0]} {Smed: dd_Smed_v6_4052_0_1, dd_Smed_v6_4052_0_1, [RH, Score=94.0, Expect=1e-23]} {RNA1509_14295} {RNA1310_1396.3} {RNA815_549.1} Mlig455_010113 {REF} {Length: 575} {Pfam: Integrase zinc binding domain [PF17921.3, score=74.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=52.6]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=28.9]; H2C2 zinc finger [PF09337.12, score=27.8]; Integrase core domain [PF00665.28, score=27.0]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=119, Expect=4e-28]} {RNA1509_14295} {RNA1310_1691.1} {RNA815_549.1} Mlig455_013379 {REF} {Length: 585} {NoTransDecoderORF} {RNA1509_14295} {RNA1310_52526} {RNA815_549.1} Mlig455_016482 {REF} {Length: 4718} {Smed: dd_Smed_v6_7411_0_1, dd_Smed_v6_7411_0_1, [RH, Score=50.4, Expect=4e-07]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1} Mlig455_040910 {REF} {Length: 9798} {Smed: dd_Smed_v6_7411_0_1, dd_Smed_v6_7411_0_1, [RH, Score=50.1, Expect=5e-07]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1} Mlig455_063010 {REF} {Length: 492} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=95.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=81.5]; Integrase zinc binding domain [PF17921.3, score=72.3]; Integrase core domain [PF00665.28, score=28.5]; H2C2 zinc finger [PF09337.12, score=26.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [RH, Score=126, Expect=9e-29]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [RH, Score=108, Expect=2e-23]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [RH, Score=108, Expect=2e-23]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=329, Expect=4e-97]} {RNA1509_14295} {RNA1310_17172} {RNA815_549.1} Mlig455_063011 {REF} {Length: 558} {Pfam: Integrase zinc binding domain [PF17921.3, score=30.2]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1} Mlig455_066077 {REF} {Length: 2026} {Pfam: Integrase zinc binding domain [PF17921.3, score=73.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.3]; Integrase core domain [PF00665.28, score=29.1]; H2C2 zinc finger [PF09337.12, score=27.8]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=126, Expect=9e-32]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1} Mlig455_066119 {REF} {Length: 5267} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=106.0]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=56.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=20.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [RH, Score=120, Expect=7e-30]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [RH, Score=103, Expect=4e-24]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [RH, Score=103, Expect=4e-24]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=194, Expect=7e-58]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1} |