M.lignano TomoSeq data search

Data search

Found 1 result for MligTC455_32692.

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
1.	MligTC455_32692	101	2.10	Mlig455_027689, Mlig455_028092, Mlig455_038546, Mlig455_039196, Mlig455_039197, Mlig455_041117, Mlig455_050844, Mlig455_054359, Mlig455_069646	Neo: Irradiation Age: Up-Down-Down	NYNRIN, RTL1	Mlig455_027689 {REF} {Length: 2645} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=119.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=83.3]; Integrase core domain [PF00665.28, score=23.8]; Integrase core domain [PF13683.8, score=21.0]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=80.1, Expect=1e-14]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=87.0, Expect=5e-17]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=86.7, Expect=7e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=86.7, Expect=7e-17]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=285, Expect=1e-86]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693} Mlig455_028092 {REF} {Length: 4721} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=122.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=118.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=83.4]; Integrase zinc binding domain [PF17921.3, score=78.0]; SCAN domain [PF02023.19, score=53.2]; Retroviral aspartyl protease [PF00077.22, score=28.6]; Integrase core domain [PF00665.28, score=24.9]; Integrase core domain [PF13683.8, score=20.0]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=107, Expect=1e-22]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=89.0, Expect=4e-17]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=89.0, Expect=4e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=284, Expect=2e-83]} {RNA1509_37360} {RNA1310_1636, RNA1509_37360} {RNA1509_37360, RNA815_16797} Mlig455_038546 {REF} {Length: 1206} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=126.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.1, Expect=2e-14]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=87.4, Expect=9e-19]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=87.4, Expect=9e-19]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=197, Expect=5e-61]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693} Mlig455_039196 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1} Mlig455_039197 {REF} {Length: 657} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=123.4]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.2]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=50.1, Expect=3e-07]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=50.1, Expect=3e-07]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=131, Expect=1e-37]} {RNA1509_37360} {RNA1310_1636} {RNA815_24693} Mlig455_041117 {REF} {Length: 1170} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=125.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=29.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.5, Expect=1e-14]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=89.7, Expect=1e-19]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=89.7, Expect=1e-19]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=201, Expect=1e-62]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693} Mlig455_050844 {REF} {Length: 4724} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=115.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=109.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=50.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=70.5, Expect=9e-13]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=80.1, Expect=3e-16]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=80.1, Expect=3e-16]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=190, Expect=3e-58]} {RNA1509_37360} {RNA1310_1636} {RNA815_16797} Mlig455_054359 {REF} {Length: 4717} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=84.3]; Integrase zinc binding domain [PF17921.3, score=78.7]; Integrase core domain [PF00665.28, score=25.5]; Integrase core domain [PF13683.8, score=21.1]; H2C2 zinc finger [PF09337.12, score=19.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=108, Expect=2e-23]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=119, Expect=1e-26]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=285, Expect=8e-86]} {RNA1509_37360} {RNA1310_1636} {RNA815_16797} Mlig455_069646 {REF} {Length: 1946} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=119.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=79.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=32.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=72.4, Expect=2e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=79.0, Expect=1e-14]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=79.0, Expect=1e-14]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=157, Expect=7e-43]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_32692

101

2.10

Mlig455_027689, Mlig455_028092, Mlig455_038546, Mlig455_039196, Mlig455_039197, Mlig455_041117, Mlig455_050844, Mlig455_054359, Mlig455_069646

Neo: Irradiation

Age: Up-Down-Down

NYNRIN, RTL1

Mlig455_027689 {REF} {Length: 2645} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=119.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=83.3]; Integrase core domain [PF00665.28, score=23.8]; Integrase core domain [PF13683.8, score=21.0]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=80.1, Expect=1e-14]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=87.0, Expect=5e-17]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=86.7, Expect=7e-17]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=86.7, Expect=7e-17]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=285, Expect=1e-86]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693}

Mlig455_028092 {REF} {Length: 4721} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=122.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=118.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=83.4]; Integrase zinc binding domain [PF17921.3, score=78.0]; SCAN domain [PF02023.19, score=53.2]; Retroviral aspartyl protease [PF00077.22, score=28.6]; Integrase core domain [PF00665.28, score=24.9]; Integrase core domain [PF13683.8, score=20.0]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=107, Expect=1e-22]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=89.0, Expect=4e-17]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=89.0, Expect=4e-17]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=284, Expect=2e-83]} {RNA1509_37360} {RNA1310_1636, RNA1509_37360} {RNA1509_37360, RNA815_16797}

Mlig455_038546 {REF} {Length: 1206} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=126.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.1, Expect=2e-14]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=87.4, Expect=9e-19]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=87.4, Expect=9e-19]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=197, Expect=5e-61]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693}

Mlig455_039196 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Mlig455_039197 {REF} {Length: 657} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=123.4]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.2]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=50.1, Expect=3e-07]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=50.1, Expect=3e-07]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=131, Expect=1e-37]} {RNA1509_37360} {RNA1310_1636} {RNA815_24693}

Mlig455_041117 {REF} {Length: 1170} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=125.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=121.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=29.7]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=75.5, Expect=1e-14]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=89.7, Expect=1e-19]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=89.7, Expect=1e-19]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=201, Expect=1e-62]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693}

Mlig455_050844 {REF} {Length: 4724} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=115.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=109.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=50.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=70.5, Expect=9e-13]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=80.1, Expect=3e-16]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=80.1, Expect=3e-16]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=190, Expect=3e-58]} {RNA1509_37360} {RNA1310_1636} {RNA815_16797}

Mlig455_054359 {REF} {Length: 4717} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=123.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=84.3]; Integrase zinc binding domain [PF17921.3, score=78.7]; Integrase core domain [PF00665.28, score=25.5]; Integrase core domain [PF13683.8, score=21.1]; H2C2 zinc finger [PF09337.12, score=19.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=108, Expect=2e-23]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=119, Expect=1e-26]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=285, Expect=8e-86]} {RNA1509_37360} {RNA1310_1636} {RNA815_16797}

Mlig455_069646 {REF} {Length: 1946} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=119.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=79.5]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=32.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=72.4, Expect=2e-12]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=79.0, Expect=1e-14]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=79.0, Expect=1e-14]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=157, Expect=7e-43]} {RNA1509_35014} {RNA1310_1636} {RNA815_24693}

Data search

Found 1 result for *MligTC455_32692*.

Found 1 result for MligTC455_32692.