TomoSeq data search

Data search

Results for MligTC455_06655

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_06655	0	0	Mlig455_071122	Neo: - Age: -		Mlig455_071122 {REF} {Length: 2198} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=106.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=76.8]; Integrase zinc binding domain [PF17921.3, score=55.5]; Integrase core domain [PF00665.28, score=50.0]; Integrase core domain [PF13683.8, score=22.6]; H2C2 zinc finger [PF09337.12, score=21.1]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=88.2, Expect=2e-17]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=88.2, Expect=2e-17]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=320, Expect=4e-96]} {RNA1509_48082} {RNA1310_73497} {RNA815_44968}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_06655

Mlig455_071122

Neo: -

Age: -

Mlig455_071122 {REF} {Length: 2198} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=106.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=76.8]; Integrase zinc binding domain [PF17921.3, score=55.5]; Integrase core domain [PF00665.28, score=50.0]; Integrase core domain [PF13683.8, score=22.6]; H2C2 zinc finger [PF09337.12, score=21.1]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=88.2, Expect=2e-17]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=88.2, Expect=2e-17]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=320, Expect=4e-96]} {RNA1509_48082} {RNA1310_73497} {RNA815_44968}

Cumulative graph for MligTC455_06655

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_06655

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation