TomoSeq data search

Data search

Results for MligTC455_08469

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_08469	0	0.00	Mlig455_067521	Neo: - Age: -	RTL1	Mlig455_067521 {REF} {Length: 3057} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=90.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=56.4]; Integrase zinc binding domain [PF17921.3, score=46.4]; Integrase core domain [PF00665.28, score=46.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.4]; Aspartyl protease [PF13650.8, score=29.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=23.8]; Retroviral aspartyl protease [PF00077.22, score=22.0]; Aspartyl protease [PF09668.12, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=100, Expect=7e-21]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=250, Expect=9e-74]} {RNA1310_33025.2} {RNA815_38369}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_08469

0.00

Mlig455_067521

Neo: -

Age: -

RTL1

Mlig455_067521 {REF} {Length: 3057} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=90.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=56.4]; Integrase zinc binding domain [PF17921.3, score=46.4]; Integrase core domain [PF00665.28, score=46.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=33.4]; Aspartyl protease [PF13650.8, score=29.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=23.8]; Retroviral aspartyl protease [PF00077.22, score=22.0]; Aspartyl protease [PF09668.12, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=100, Expect=7e-21]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=250, Expect=9e-74]} {RNA1310_33025.2} {RNA815_38369}

Cumulative graph for MligTC455_08469

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_08469

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation