TomoSeq data search

Data search

Results for MligTC455_24587

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_24587	1	0.02	Mlig455_014786	Neo: - Age: Up-Down-Down	RTL1	Mlig455_014786 {REF} {Length: 1366} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=99.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=94.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=58.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=95.9, Expect=2e-20]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=81.3, Expect=9e-16]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=81.3, Expect=9e-16]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=283, Expect=9e-90]} {RNA1509_37808} {RNA1310_227.1} {RNA815_131.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_24587

0.02

Mlig455_014786

Neo: -

Age: Up-Down-Down

RTL1

Mlig455_014786 {REF} {Length: 1366} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=99.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=94.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=58.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=95.9, Expect=2e-20]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=81.3, Expect=9e-16]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=81.3, Expect=9e-16]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=283, Expect=9e-90]} {RNA1509_37808} {RNA1310_227.1} {RNA815_131.1}

Cumulative graph for MligTC455_24587

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_24587

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation