TomoSeq data search

Data search

Results for MligTC455_26619

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_26619	0	0.01	Mlig455_039374, Mlig455_055023	Neo: - Age: -	RTL1	Mlig455_039374 {REF} {Length: 1436} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=95.5]; Viral RNA-dependent RNA polymerase [PF00680.22, score=18.9]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=180, Expect=2e-50]} {RNA1509_24311} {RNA1310_3864} {RNA815_49943} Mlig455_055023 {REF} {Length: 2177} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=83.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=56.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=94.7, Expect=3e-19]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=215, Expect=4e-61]} {RNA1509_24311} {RNA1310_3864} {RNA815_381.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_26619

0.01

Mlig455_039374, Mlig455_055023

Neo: -

Age: -

RTL1

Mlig455_039374 {REF} {Length: 1436} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=95.5]; Viral RNA-dependent RNA polymerase [PF00680.22, score=18.9]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=180, Expect=2e-50]} {RNA1509_24311} {RNA1310_3864} {RNA815_49943}

Mlig455_055023 {REF} {Length: 2177} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=107.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=83.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=56.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=94.7, Expect=3e-19]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=215, Expect=4e-61]} {RNA1509_24311} {RNA1310_3864} {RNA815_381.1}

Cumulative graph for MligTC455_26619

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_26619

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation