TomoSeq data search

Data search

Results for MligTC455_27867

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_27867	3	0.06	Mlig455_040663	Neo: - Age: Up-Down-Down	RTL1	Mlig455_040663 {REF} {Length: 3827} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=62.9]; Integrase zinc binding domain [PF17921.3, score=53.6]; Integrase core domain [PF00665.28, score=49.9]; Zinc knuckle [PF00098.25, score=23.9]; Integrase core domain [PF13683.8, score=23.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=90.9, Expect=9e-18]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=303, Expect=6e-87]} {RNA1509_44038} {RNA1310_32905.1} {RNA815_52853}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27867

0.06

Mlig455_040663

Neo: -

Age: Up-Down-Down

RTL1

Mlig455_040663 {REF} {Length: 3827} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=62.9]; Integrase zinc binding domain [PF17921.3, score=53.6]; Integrase core domain [PF00665.28, score=49.9]; Zinc knuckle [PF00098.25, score=23.9]; Integrase core domain [PF13683.8, score=23.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=90.9, Expect=9e-18]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=303, Expect=6e-87]} {RNA1509_44038} {RNA1310_32905.1} {RNA815_52853}

Cumulative graph for MligTC455_27867

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_27867

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation