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Results for MligTC455_28260

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28260	11	0.24	Mlig455_014253, Mlig455_028127, Mlig455_063140	Neo: - Age: -	RTL1	Mlig455_014253 {REF} {Length: 3200} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=100.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.1]; Integrase zinc binding domain [PF17921.3, score=64.5]; Integrase core domain [PF00665.28, score=46.5]; H2C2 zinc finger [PF09337.12, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=107, Expect=7e-23]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=89.4, Expect=2e-17]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=330, Expect=7e-97]} {RNA1509_41793} {RNA1310_4276} {RNA815_25818} Mlig455_028127 {REF} {Length: 6102} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.2]; Integrase zinc binding domain [PF17921.3, score=64.6]; Integrase core domain [PF00665.28, score=45.7]; H2C2 zinc finger [PF09337.12, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=106, Expect=1e-22]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=87.4, Expect=7e-17]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=311, Expect=1e-90]} {RNA1509_41793} {RNA1310_4276} {RNA815_25818} Mlig455_063140 {REF} {Length: 2875} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.5]; Integrase zinc binding domain [PF17921.3, score=64.1]; H2C2 zinc finger [PF09337.12, score=24.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=106, Expect=9e-23]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=265, Expect=2e-75]} {RNA1509_41793} {RNA1310_4276} {RNA815_25818}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28260

0.24

Mlig455_014253, Mlig455_028127, Mlig455_063140

Neo: -

Age: -

RTL1

Mlig455_014253 {REF} {Length: 3200} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=100.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.1]; Integrase zinc binding domain [PF17921.3, score=64.5]; Integrase core domain [PF00665.28, score=46.5]; H2C2 zinc finger [PF09337.12, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=107, Expect=7e-23]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=89.4, Expect=2e-17]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=330, Expect=7e-97]} {RNA1509_41793} {RNA1310_4276} {RNA815_25818}

Mlig455_028127 {REF} {Length: 6102} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.2]; Integrase zinc binding domain [PF17921.3, score=64.6]; Integrase core domain [PF00665.28, score=45.7]; H2C2 zinc finger [PF09337.12, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=106, Expect=1e-22]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=87.4, Expect=7e-17]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=311, Expect=1e-90]} {RNA1509_41793} {RNA1310_4276} {RNA815_25818}

Mlig455_063140 {REF} {Length: 2875} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=118.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.5]; Integrase zinc binding domain [PF17921.3, score=64.1]; H2C2 zinc finger [PF09337.12, score=24.4]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=106, Expect=9e-23]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=265, Expect=2e-75]} {RNA1509_41793} {RNA1310_4276} {RNA815_25818}

Cumulative graph for MligTC455_28260

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.486	0.595	0.99998	1.00000
RegionR2	3.665	0.595	0.99967	1.00000
RegionR3	-0.021	0.595	0.99994	1.00000
RegionR4	-1.579	0.595	0.99981	1.00000
RegionR5	-0.823	0.595	0.99989	1.00000
RegionR6	-1.133	0.595	0.99989	1.00000
RegionR7	1.315	0.595	0.99971	1.00000
RegionR8	0.06	0.595	0.99991	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.881	0.595	0.99996	1.00000
RegenerationR2	-2.086	0.595	0.00506	0.11159
RegenerationR3	0.476	0.595	0.99990	1.00000
RegenerationR4	0.714	0.595	0.99970	1.00000
RegenerationR5	-0.997	0.595	0.99975	1.00000
RegenerationR6	-0.073	0.595	0.99965	1.00000
RegenerationBL	-2.369	0.595	0.99993	1.00000
RegenerationTP	-2.09	0.595	0.99993	1.00000

Genes with expression patterns similar to MligTC455_28260

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation