TomoSeq data search

Data search

Results for MligTC455_54907

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_54907	3	0.06	Mlig455_070975	Neo: - Age: -	RTL1	Mlig455_070975 {REF} {Length: 405} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=97.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.3]; Integrase core domain [PF00665.28, score=43.0]; Integrase zinc binding domain [PF17921.3, score=31.1]; Aspartyl protease [PF09668.12, score=24.6]; 'Cold-shock' DNA-binding domain [PF00313.24, score=19.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=108, Expect=8e-23]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=78.6, Expect=4e-14]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=308, Expect=6e-87]} {RNA1509_25922} {RNA1310_291.1} {RNA815_44835}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_54907

0.06

Mlig455_070975

Neo: -

Age: -

RTL1

Mlig455_070975 {REF} {Length: 405} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=97.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.3]; Integrase core domain [PF00665.28, score=43.0]; Integrase zinc binding domain [PF17921.3, score=31.1]; Aspartyl protease [PF09668.12, score=24.6]; 'Cold-shock' DNA-binding domain [PF00313.24, score=19.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=108, Expect=8e-23]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=78.6, Expect=4e-14]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=308, Expect=6e-87]} {RNA1509_25922} {RNA1310_291.1} {RNA815_44835}

Cumulative graph for MligTC455_54907

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_54907

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation