M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_01052

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_01052 9 0.19 Mlig455_057202

Neo: -

Age: -

 Mlig455_057202 {REF} {Length: 501} {NoTransDecoderORF}

Cumulative graph for MligTC455_01052

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_01052

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_01052 9 0.19 Mlig455_057202

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_057202 {REF} {Length: 501} {NoTransDecoderORF}
2. MligTC455_53656 27 0.57 Mlig455_033327

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_033327 {REF} {Length: 1116} {Smed: dd_Smed_v6_91651_0_1, dd_Smed_v6_91651_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_48973} {RNA1310_39833} {RNA815_36286}
3. MligTC455_20476 29 0.61 Mlig455_009224

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_009224 {REF} {Length: 1688} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=38.1]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=49.7, Expect=2e-06]} {RNA1310_19222} {RNA815_35367}
4. MligTC455_17177 103 2.15 Mlig455_048992, Mlig455_049009

Neo: -

Age: Down-Down-Up

 0.973 - - - - 0.973 -

Mlig455_048992 {REF} {Length: 1836} {RNA1509_44702} {RNA1310_14743, RNA1509_44702} {RNA1509_44702, RNA815_20669.1}

Mlig455_049009 {REF} {Length: 1823} {RNA1509_44702} {RNA1310_14743} {RNA815_20669.1}
5. MligTC455_48860 266 5.54 Mlig455_053885, Mlig455_055410

Neo: -

Age: Down-Up-Down

 0.97 - - - - 0.970 -

Mlig455_053885 {REF} {Length: 2736} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.8]; SH3 domain [PF00018.30, score=20.7]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=57.0, Expect=1e-08]} {RNA1509_11823} {RNA1310_16283, RNA1509_11823} {RNA1509_11823, RNA815_6206.1}

Mlig455_055410 {REF} {Length: 2712} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.8]; SH3 domain [PF00018.30, score=20.1]; Autophagy protein 16 (ATG16) [PF08614.13, score=20.0]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_54914} {RNA1310_16283, RNA1509_54914} {RNA1509_54914, RNA815_6206.1}
6. MligTC455_38949 105 2.19 Mlig455_065209

Neo: -

Age: -

Region-specific R2: 7.633

Region-enriched R2: 10.088/0.00000

 0.963 - - - - 0.963 - Mlig455_065209 {REF} {Length: 591} {Pfam: Insulin/IGF/Relaxin family [PF00049.20, score=23.2]} {RNA1509_44618} {RNA1310_63839, RNA1509_44618} {RNA1509_44618, RNA815_35329}
7. MligTC455_44034 75 1.56 Mlig455_056055, Mlig455_061595, Mlig455_061597, Mlig455_061985

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_056055 {REF} {Length: 245} {NoTransDecoderORF} {RNA815_40216}

Mlig455_061595 {REF} {Length: 436} {NoTransDecoderORF} {RNA815_40216}

Mlig455_061597 {REF} {Length: 525} {NoTransDecoderORF} {RNA815_40216}

Mlig455_061985 {REF} {Length: 121} {NoTransDecoderORF} {RNA815_40216}
8. MligTC455_30052 18 0.38 Mlig455_034711

Neo: -

Age: Up-Down-Down

Region-enriched R2: 7.452/0.01054

 0.959 - - - - 0.959 - Mlig455_034711 {REF} {Length: 3673} {Smed: dd_Smed_v6_7411_0_1, dd_Smed_v6_7411_0_1, [RH, Score=48.9, Expect=2e-06]} {RNA1509_14295} {RNA1310_1396.1} {RNA815_549.1}
9. MligTC455_06102 9 0.19 Mlig455_016363

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_016363 {REF} {Length: 711} {NoTransDecoderORF} {RNA1310_76160} {RNA815_19899}
10. MligTC455_10178 77 1.6 Mlig455_017978

Neo: -

Age: -

Region-enriched R7: 6.377/0.00000

 GRM3 0.957 - - - - 0.957 - Mlig455_017978 {REF} {Length: 3464} {Pfam: Receptor family ligand binding region [PF01094.30, score=224.4]; 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=185.8]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=39.1]} {Human: ENSG00000198822, GRM3, glutamate metabotropic receptor 3, [RH, Score=675, Expect=0.0]} {Mouse: ENSMUSG00000003974, Grm3, glutamate receptor, metabotropic 3, [RH, Score=670, Expect=0.0]; ENSMUSG00000023192, Grm2, glutamate receptor, metabotropic 2, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0019985, mGluR, metabotropic Glutamate Receptor, [Score=725, Expect=0.0]} {Celegans: WBGene00003232, mgl-1, Probable metabotropic glutamate receptor mgl-1, [RH, Score=625, Expect=0.0]} {Smed: dd_Smed_v6_15419_0_1, dd_Smed_v6_15419_0_1, [RH, Score=803, Expect=0.0]} {RNA1310_41220}
11. MligTC455_29361 135 2.82 Mlig455_037251

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_037251 {REF} {Length: 608} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38215} {RNA1310_46814} {RNA815_22703.1}
12. MligTC455_30575 30 0.62 Mlig455_038999

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_038999 {REF} {Length: 1377} {Pfam: PAN domain [PF00024.28, score=21.3]} {RNA1509_48973} {RNA1310_53414} {RNA815_46038}
13. MligTC455_12136 29 0.61 Mlig455_008472

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_008472 {REF} {Length: 2507} {RNA1509_12100} {RNA1310_55188} {RNA815_14259}
14. MligTC455_15150 7 0.14 Mlig455_034554, Mlig455_041521

Neo: Int S/G2/M

Age: Up-Down-Down

 ELAVL1, ELAVL2 0.953 - - - - 0.953 -

Mlig455_034554 {REF} {Length: 2981} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=175.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=122.3]} {Human: ENSG00000066044, ELAVL1, ELAV like RNA binding protein 1, [Score=132, Expect=2e-33]; ENSG00000135094, SDS, serine dehydratase, [Score=126, Expect=4e-31]} {Mouse: ENSMUSG00000029596, Sdsl, serine dehydratase-like, [Score=145, Expect=8e-38]; ENSMUSG00000029597, Sds, serine dehydratase, [Score=141, Expect=1e-36]} {Dmel: FBgn0086675, fne, found in neurons, [Score=152, Expect=3e-40]} {Celegans: WBGene00001368, exc-7, [Score=139, Expect=3e-35]} {Smed: dd_Smed_v6_2842_0_1, dd_Smed_v6_2842_0_1, [Score=158, Expect=7e-40]} {RNA1509_17790, RNA1509_5868} {RNA1310_3456.1, RNA1509_17790} {RNA1509_17790, RNA815_18672}

Mlig455_041521 {REF} {Length: 989} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=54.9]} {Human: ENSG00000107105, ELAVL2, ELAV like RNA binding protein 2, [Score=92.8, Expect=4e-24]; ENSG00000162374, ELAVL4, ELAV like RNA binding protein 4, [Score=90.5, Expect=6e-22]} {Mouse: ENSMUSG00000008489, Elavl2, ELAV like RNA binding protein 1, [Score=92.8, Expect=6e-25]; ENSMUSG00000028546, Elavl4, ELAV like RNA binding protein 4, [Score=91.7, Expect=2e-24]} {Dmel: FBgn0086675, fne, found in neurons, [Score=80.5, Expect=1e-18]} {Celegans: WBGene00001368, exc-7, [Score=80.5, Expect=1e-18]} {Smed: dd_Smed_v6_11311_0_1, dd_Smed_v6_11311_0_1, [Score=73.9, Expect=2e-17]} {RNA1509_5868} {RNA1310_4967.2} {RNA815_50264}
15. MligTC455_49337 141 2.94 Mlig455_004942

Neo: -

Age: -

Region-enriched R2: 4.260/0.00004
Region-enriched R7: 4.073/0.00000
Region-enriched R6: 2.891/0.00737

 CA7 0.953 - - - - 0.953 - Mlig455_004942 {REF} {Length: 2623} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=206.7]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=157, Expect=2e-45]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=156, Expect=2e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=129, Expect=8e-35]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=89.4, Expect=4e-20]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [Score=160, Expect=1e-46]} {RNA1509_43765} {RNA1310_22186} {RNA815_18428}
16. MligTC455_00345 7 0.15 Mlig455_028221

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_028221 {REF} {Length: 162} {NoTransDecoderORF} {RNA1509_6383} {RNA1310_47679} {RNA815_34957}
17. MligTC455_06856 18 0.37 Mlig455_022133

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_022133 {REF} {Length: 440}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA