M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_02397

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_02397 23 0.47 Mlig455_039296

Neo: -

Age: -

 ZMYM1 Mlig455_039296 {REF} {Length: 553} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=46.7]} {Human: ENSG00000197056, ZMYM1, zinc finger MYM-type containing 1, [Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000043872, Zmym1, zinc finger, MYM domain containing 1, [Score=45.8, Expect=2e-06]} {Smed: dd_Smed_v6_13305_1_1, dd_Smed_v6_13305_1_1, [Score=62.4, Expect=2e-12]} {RNA1310_8915.1} {RNA815_58185}

Cumulative graph for MligTC455_02397

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.165 0.973 0.99976 1.00000
RegionR2 -1.874 0.973 0.98525 1.00000
RegionR3 0.05 0.973 0.76627 1.00000
RegionR4 3.439 0.973 0.09972 0.30696
RegionR5 -0.921 0.973 0.90972 1.00000
RegionR6 1.456 0.973 0.55626 1.00000
RegionR7 -2.784 0.973 0.99977 1.00000
RegionR8 -2.531 0.973 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.703 0.973 0.99980 1.00000
RegenerationR2 0.156 0.973 0.89736 1.00000
RegenerationR3 -1.282 0.973 0.20598 0.64106
RegenerationR4 -1.737 0.973 0.27972 0.72482
RegenerationR5 -0.369 0.973 0.79746 0.98790
RegenerationR6 -2.514 0.973 0.02960 0.21471
RegenerationBL -2.547 0.973 1.00000 1.00000
RegenerationTP 0.743 0.973 0.74055 1.00000


Genes with expression patterns similar to MligTC455_02397

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_02397 23 0.47 Mlig455_039296

Neo: -

Age: -

 ZMYM1 2 1.000 - - - 1.000 - Mlig455_039296 {REF} {Length: 553} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=46.7]} {Human: ENSG00000197056, ZMYM1, zinc finger MYM-type containing 1, [Score=44.7, Expect=1e-05]} {Mouse: ENSMUSG00000043872, Zmym1, zinc finger, MYM domain containing 1, [Score=45.8, Expect=2e-06]} {Smed: dd_Smed_v6_13305_1_1, dd_Smed_v6_13305_1_1, [Score=62.4, Expect=2e-12]} {RNA1310_8915.1} {RNA815_58185}
2. MligTC455_02398 23 0.48 Mlig455_012211, Mlig455_069071

Neo: -

Age: Down-Up-Down

 1.992 1.000 - - - 0.992 -

Mlig455_012211 {REF} {Length: 1085} {Pfam: Domain of unknown function (DUF4371) [PF14291.8, score=70.2]} {Smed: dd_Smed_v6_13305_1_14, dd_Smed_v6_13305_1_14, [Score=67.8, Expect=7e-15]} {RNA1509_44118} {RNA1310_8915.1} {RNA815_58185}

Mlig455_069071 {REF} {Length: 2795} {RNA1509_44118} {RNA1310_31812} {RNA815_29997}
3. MligTC455_51029 340 7.09 Mlig455_056736

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.541

 0.965 - - - - 0.965 - Mlig455_056736 {REF} {Length: 850} {RNA1509_4527} {RNA1310_27536} {RNA815_19650}
4. MligTC455_25184 563 11.72 Mlig455_005207

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-1.052

 0.961 - - - - 0.961 - Mlig455_005207 {REF} {Length: 3047} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=136.2]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=49.7, Expect=5e-06]} {Smed: dd_Smed_v6_20466_0_2, dd_Smed_v6_20466_0_2, [Score=84.3, Expect=5e-17]} {RNA1509_9013} {RNA1310_7298, RNA1509_9013} {RNA1509_9013, RNA815_2337}
5. MligTC455_47221 2304 47.99 Mlig455_053054

Neo: -

Age: -

 PCSK4 0.961 - - - - 0.961 - Mlig455_053054 {REF} {Length: 2790} {Pfam: Subtilase family [PF00082.24, score=113.4]; Proprotein convertase P-domain [PF01483.22, score=45.5]} {Human: ENSG00000115257, PCSK4, proprotein convertase subtilisin/kexin type 4, [Score=304, Expect=1e-94]} {Mouse: ENSMUSG00000020131, Pcsk4, proprotein convertase subtilisin/kexin type 4, [Score=290, Expect=1e-90]; ENSMUSG00000024713, Pcsk5, proprotein convertase subtilisin/kexin type 5, [Score=288, Expect=3e-85]; ENSMUSG00000030530, Furin, furin (paired basic amino acid cleaving enzyme), [Score=280, Expect=2e-85]} {Dmel: FBgn0004509, Fur1, Furin 1, [Score=266, Expect=7e-80]} {Celegans: WBGene00002232, kpc-1, Furin-like protease kpc-1, [Score=301, Expect=1e-94]} {Smed: dd_Smed_v6_8406_0_2, dd_Smed_v6_8406_0_2, [Score=264, Expect=3e-81]} {RNA1509_21248, RNA1509_3476} {RNA1310_9937, RNA1509_21248} {RNA1509_21248, RNA815_2907}
6. MligTC455_37927 29 0.59 Mlig455_005071, Mlig455_014052, Mlig455_025140, Mlig455_039469, Mlig455_070126

Neo: -

Age: -

 0.959 0.959 - - - - -

Mlig455_005071 {REF} {Length: 965} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=28.7]; Myb/SANT-like DNA-binding domain [PF13837.8, score=20.2]} {RNA1310_46038}

Mlig455_014052 {REF} {Length: 1489} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=32.8]; Myb/SANT-like DNA-binding domain [PF13837.8, score=22.5]} {RNA1310_68333}

Mlig455_025140 {REF} {Length: 761} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=35.9]; Myb/SANT-like DNA-binding domain [PF13837.8, score=23.0]} {RNA1310_46038}

Mlig455_039469 {REF} {Length: 1212} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=25.1]} {RNA1310_46038} {RNA815_30681}

Mlig455_070126 {REF} {Length: 1489} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=32.8]; Myb/SANT-like DNA-binding domain [PF13837.8, score=22.5]} {RNA1310_68333}
7. MligTC455_09723 43 0.89 Mlig455_048052, Mlig455_048071

Neo: -

Age: Up-Down-Down

 0.954 0.954 - - - - -

Mlig455_048052 {REF} {Length: 3592} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=110.8]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=57.6]; Glycine rich protein family [PF07172.13, score=21.2]} {Dmel: FBgn0033579, CG13229, [Score=121, Expect=1e-29]} {Celegans: WBGene00016428, dmsr-7, DroMyoSuppressin Receptor related, [Score=135, Expect=2e-34]} {Smed: dd_Smed_v6_24203_0_1, dd_Smed_v6_24203_0_1, [Score=204, Expect=1e-60]} {RNA1509_18576} {RNA1310_81440} {RNA815_16348}

Mlig455_048071 {REF} {Length: 4002} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=110.0]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=58.2]; Glycine rich protein family [PF07172.13, score=21.9]} {Dmel: FBgn0033579, CG13229, [Score=119, Expect=5e-29]} {Celegans: WBGene00016428, dmsr-7, DroMyoSuppressin Receptor related, [Score=131, Expect=4e-33]} {Smed: dd_Smed_v6_24203_0_1, dd_Smed_v6_24203_0_1, [Score=202, Expect=8e-60]} {RNA1509_18576} {RNA1310_81440} {RNA815_16348}
8. MligTC455_15081 19 0.39 Mlig455_065134

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_065134 {REF} {Length: 1297} {RNA1310_74150}
9. MligTC455_08975 5 0.1 Mlig455_024303

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_024303 {REF} {Length: 545} {NoTransDecoderORF} {RNA1310_82331}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA