Data search


search
Exact
Search

Results for MligTC455_02449

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_02449 13 0.28 Mlig455_050758

Neo: -

Age: -

Mlig455_050758 {REF} {Length: 377} {TRANSSPLICED} {RNA1310_129715}

Cumulative graph for MligTC455_02449

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.477 0.575 0.99989 1.00000
RegionR2 3.018 0.575 0.99983 1.00000
RegionR3 0.69 0.575 0.99996 1.00000
RegionR4 -1.83 0.575 0.99988 1.00000
RegionR5 -0.254 0.575 0.99997 1.00000
RegionR6 0.684 0.575 1.00000 1.00000
RegionR7 -0.08 0.575 1.00000 1.00000
RegionR8 0.249 0.575 0.99999 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.584 0.575 0.99994 1.00000
RegenerationR2 1.765 0.575 0.99988 1.00000
RegenerationR3 5.983 0.575 0.99983 1.00000
RegenerationR4 5.752 0.575 0.99966 1.00000
RegenerationR5 3.785 0.575 0.03596 0.31432
RegenerationR6 6.002 0.575 0.00095 0.03337
RegenerationBL 2.643 0.575 0.99993 1.00000
RegenerationTP 5.858 0.575 0.00745 0.14517


Genes with expression patterns similar to MligTC455_02449

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_02449 13 0.28 Mlig455_050758

Neo: -

Age: -

1 - - - - - 1.000 Mlig455_050758 {REF} {Length: 377} {TRANSSPLICED} {RNA1310_129715}
2. MligTC455_36131 40 0.83 Mlig455_062116

Neo: -

Age: -

0.973 - - - - - 0.973 Mlig455_062116 {REF} {Length: 4796} {RNA1509_50856} {RNA1310_3723} {RNA815_27362}
3. MligTC455_36132 41 0.86 Mlig455_069660

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.522

0.972 - - - - - 0.972 Mlig455_069660 {REF} {Length: 4786} {RNA1509_50856} {RNA1310_3723} {RNA815_27362}
4. MligTC455_45519 148 3.08 Mlig455_011435, Mlig455_061176

Neo: -

Age: -

0.964 - - - - - 0.964

Mlig455_011435 {REF} {Length: 2322} {RNA1310_38993} {RNA815_43660}

Mlig455_061176 {REF} {Length: 3147} {RNA1509_51062} {RNA1310_38993} {RNA815_43660}
5. MligTC455_24791 154 3.21 Mlig455_045423, Mlig455_065749

Neo: -

Age: -

PCDH1, PCDHGB5 0.961 - - - - - 0.961

Mlig455_045423 {REF} {Length: 4481} {Pfam: Cadherin domain [PF00028.19, score=229.5]; Cadherin-like [PF16184.7, score=35.1]; Cadherin-like [PF08266.14, score=27.4]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=222, Expect=2e-58]; ENSG00000184226, PCDH9, protocadherin 9, [Score=218, Expect=3e-57]; ENSG00000250120, PCDHA10, protocadherin alpha 10, [Score=217, Expect=1e-57]; ENSG00000249158, PCDHA11, protocadherin alpha 11, [Score=213, Expect=9e-57]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=226, Expect=3e-60]; ENSMUSG00000103770, Pcdha9, protocadherin alpha 9, [Score=219, Expect=5e-58]; ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=217, Expect=5e-57]} {Dmel: FBgn0284247, ds, dachsous, [Score=190, Expect=2e-48]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=170, Expect=2e-42]} {Smed: dd_Smed_v6_11579_0_1, dd_Smed_v6_11579_0_1, [Score=259, Expect=2e-71]} {RNA1509_44071} {RNA1310_13032} {RNA815_20533}

Mlig455_065749 {REF} {Length: 3579} {Pfam: Cadherin domain [PF00028.19, score=148.0]; Cadherin-like [PF16184.7, score=24.4]; Procyclic acidic repetitive protein (PARP) [PF05887.13, score=22.8]} {Human: ENSG00000276547, PCDHGB5, protocadherin gamma subfamily B, 5, [Score=161, Expect=5e-40]; ENSG00000166341, DCHS1, dachsous cadherin-related 1, [Score=155, Expect=9e-38]; ENSG00000253910, PCDHGB2, protocadherin gamma subfamily B, 2, [Score=155, Expect=4e-38]} {Mouse: ENSMUSG00000102543, Pcdhgc5, protocadherin gamma subfamily C, 5, [Score=159, Expect=2e-39]; ENSMUSG00000103749, Pcdhgb5, protocadherin gamma subfamily B, 5, [Score=155, Expect=2e-38]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=153, Expect=1e-37]} {Dmel: FBgn0284247, ds, dachsous, [Score=146, Expect=2e-35]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=113, Expect=3e-25]} {Smed: dd_Smed_v6_11579_0_1, dd_Smed_v6_11579_0_1, [Score=197, Expect=4e-52]} {RNA1509_44071} {RNA1310_21522} {RNA815_37516}
6. MligTC455_46186 32 0.67 Mlig455_070704

Neo: -

Age: Down-Up-Down

0.961 - - - - - 0.961 Mlig455_070704 {REF} {Length: 840} {TRANSSPLICED} {RNA1509_21333} {RNA1310_96499} {RNA815_44302}
7. MligTC455_27932 296 6.16 Mlig455_062802

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.661

TTN 0.96 - - - - - 0.960 Mlig455_062802 {REF} {Length: 32843} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=542.7]; Fibronectin type III domain [PF00041.23, score=498.9]; Immunoglobulin domain [PF13927.8, score=288.7]; Immunoglobulin domain [PF13895.8, score=119.0]; Immunoglobulin domain [PF00047.27, score=110.3]; Immunoglobulin V-set domain [PF07686.19, score=82.4]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=60.2]; Tissue factor [PF01108.19, score=56.9]; Penicillin-Binding Protein C-terminus Family [PF06832.14, score=48.3]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=36.4]; Complex I intermediate-associated protein 30 (CIA30) [PF08547.14, score=25.2]; Type 2 DNA topoisomerase 6 subunit B C-terminal domain [PF18000.3, score=24.7]; Heavy-metal-associated domain [PF00403.28, score=23.0]; Exo-beta-D-glucosaminidase Ig-fold domain [PF18368.3, score=19.4]} {Human: ENSG00000155657, TTN, titin, [Score=456, Expect=2e-127]} {Mouse: ENSMUSG00000051747, Ttn, titin, [Score=513, Expect=9e-145]} {Dmel: FBgn0005666, bt, bent, [Score=419, Expect=1e-116]} {Celegans: WBGene00006759, unc-22, Twitchin, [Score=325, Expect=2e-88]} {Smed: dd_Smed_v6_2438_0_1, dd_Smed_v6_2438_0_1, [Score=598, Expect=1e-171]} {RNA1509_16845} {RNA1310_1.1} {RNA815_0}
8. MligTC455_28013 257 5.35 Mlig455_005433

Neo: -

Age: Down-Down-Down

0.957 - - - - - 0.957 Mlig455_005433 {REF} {Length: 584} {RNA1509_1780} {RNA1310_8217} {RNA815_80.1}
9. MligTC455_36687 27 0.57 Mlig455_062022

Neo: -

Age: logFC(26M/2M)=-0.724

RGS3 0.957 - - - - - 0.957 Mlig455_062022 {REF} {Length: 3547} {Pfam: PDZ domain [PF00595.26, score=32.8]; PDZ domain [PF17820.3, score=29.3]} {Human: ENSG00000138835, RGS3, regulator of G protein signaling 3, [Score=58.9, Expect=4e-08]} {Mouse: ENSMUSG00000059810, Rgs3, regulator of G-protein signaling 3, [RH, Score=57.0, Expect=6e-08]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=52.8, Expect=2e-06]} {Smed: dd_Smed_v6_17732_0_1, dd_Smed_v6_17732_0_1, [Score=61.2, Expect=2e-09]} {RNA1509_12566} {RNA1310_5288.1} {RNA815_25046}
10. MligTC455_33349 58 1.2 Mlig455_025777, Mlig455_040959, Mlig455_050539

Neo: -

Age: -

THAP1, THAP9, TLR4 0.956 - - - - - 0.956

Mlig455_025777 {REF} {Length: 3515} {Human: ENSG00000168152, THAP9, THAP domain containing 9, [Score=216, Expect=1e-59]} {RNA1509_26759, RNA1509_41475} {RNA1310_2122.1, RNA1509_41475} {RNA1509_41475, RNA815_20503}

Mlig455_040959 {REF} {Length: 569} {Pfam: THAP domain [PF05485.14, score=67.9]} {Human: ENSG00000131931, THAP1, THAP domain containing 1, [Score=63.5, Expect=1e-10]; ENSG00000173451, THAP2, THAP domain containing 2, [Score=63.2, Expect=2e-10]} {Mouse: ENSMUSG00000037214, Thap1, THAP domain containing, apoptosis associated protein 1, [Score=63.9, Expect=5e-11]; ENSMUSG00000020137, Thap2, THAP domain containing, apoptosis associated protein 2, [Score=62.4, Expect=2e-10]} {Smed: dd_Smed_v6_129_2_2, dd_Smed_v6_129_2_2, [Score=65.9, Expect=7e-11]} {RNA1509_26759} {RNA1310_2122.1} {RNA815_30707}

Mlig455_050539 {REF} {Length: 7351} {Pfam: Leucine rich repeat [PF13855.8, score=87.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=65.9]; TIR domain [PF01582.22, score=26.4]; Leucine Rich Repeat [PF00560.35, score=25.0]; TIR domain [PF13676.8, score=21.7]} {Human: ENSG00000136869, TLR4, toll like receptor 4, [Score=83.6, Expect=9e-16]} {Mouse: ENSMUSG00000030600, Lrfn1, leucine rich repeat and fibronectin type III domain containing 1, [Score=70.1, Expect=9e-12]; ENSMUSG00000036957, Lrfn3, leucine rich repeat and fibronectin type III domain containing 3, [Score=67.4, Expect=5e-11]} {Dmel: FBgn0026760, Tehao, [Score=82.0, Expect=1e-15]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=53.5, Expect=6e-07]} {RNA1509_41475} {RNA1310_2122.1} {RNA815_20503}
11. MligTC455_16209 72 1.51 Mlig455_020329

Neo: -

Age: -

Region-enriched R2: 5.444/0.00658

0.953 - - - - - 0.953 Mlig455_020329 {REF} {Length: 2483} {Pfam: TIR domain [PF13676.8, score=38.4]; TIR domain [PF01582.22, score=29.5]; Domain of unknown function (DUF4481) [PF14800.8, score=20.4]} {Dmel: FBgn0032095, Toll-4, [RH, Score=53.1, Expect=7e-07]} {Smed: dd_Smed_v6_14454_0_1, dd_Smed_v6_14454_0_1, [RH, Score=270, Expect=2e-82]} {RNA1310_32445} {RNA815_27719}
12. MligTC455_44034 75 1.56 Mlig455_056055, Mlig455_061595, Mlig455_061597, Mlig455_061985

Neo: -

Age: -

0.953 - - - - - 0.953

Mlig455_056055 {REF} {Length: 245} {NoTransDecoderORF} {RNA815_40216}

Mlig455_061595 {REF} {Length: 436} {NoTransDecoderORF} {RNA815_40216}

Mlig455_061597 {REF} {Length: 525} {NoTransDecoderORF} {RNA815_40216}

Mlig455_061985 {REF} {Length: 121} {NoTransDecoderORF} {RNA815_40216}
13. MligTC455_17196 88 1.84 Mlig455_066675

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.733

0.951 - - - - - 0.951 Mlig455_066675 {REF} {Length: 889} {TRANSSPLICED} {RNA1509_18138} {RNA1310_24629} {RNA815_31762}
14. MligTC455_29390 64 1.33 Mlig455_054432

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.814

TTLL10 0.95 - - - - - 0.950 Mlig455_054432 {REF} {Length: 3111} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=159.2]; YheC/D like ATP-grasp [PF14398.8, score=31.4]} {Human: ENSG00000162571, TTLL10, tubulin tyrosine ligase like 10, [Score=202, Expect=8e-57]} {Mouse: ENSMUSG00000029074, Ttll10, tubulin tyrosine ligase-like family, member 10, [Score=201, Expect=4e-56]} {Dmel: FBgn0030823, CG8918, [Score=116, Expect=2e-27]} {Celegans: WBGene00044187, ttll-9, Tubulin Tyrosine Ligase Like, [Score=98.6, Expect=5e-22]} {Smed: dd_Smed_v6_9664_0_1, dd_Smed_v6_9664_0_1, [Score=203, Expect=1e-57]} {RNA1509_45551} {RNA1310_23793, RNA1509_45551} {RNA1509_45551, RNA815_15775}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA