M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_04272

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_04272 303 6.30 Mlig455_046603

Neo: Int S/G2/M

Age: -

 Mlig455_046603 {REF} {Length: 5382} {TRANSSPLICED} {RNA1509_35152} {RNA1310_3240.1} {RNA815_13045}

Cumulative graph for MligTC455_04272

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.216 3.171 0.52108 1.00000
RegionR2 0.274 3.171 0.66207 0.99341
RegionR3 -0.328 3.171 0.55458 1.00000
RegionR4 0.88 3.171 0.13920 0.38066
RegionR5 0.829 3.171 0.05569 0.20231
RegionR6 -0.027 3.171 0.96303 1.00000
RegionR7 -0.066 3.171 0.92604 1.00000
RegionR8 -0.346 3.171 0.68990 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.497 3.171 0.46797 1.00000
RegenerationR2 -0.478 3.171 0.31270 0.75227
RegenerationR3 0.665 3.171 0.21611 0.65265
RegenerationR4 -0.039 3.171 0.93940 1.00000
RegenerationR5 -0.04 3.171 0.92880 1.00000
RegenerationR6 0.862 3.171 0.11160 0.41156
RegenerationBL 0.179 3.171 0.80985 1.00000
RegenerationTP -0.194 3.171 0.80783 1.00000


Genes with expression patterns similar to MligTC455_04272

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_04272 303 6.3 Mlig455_046603

Neo: Int S/G2/M

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_046603 {REF} {Length: 5382} {TRANSSPLICED} {RNA1509_35152} {RNA1310_3240.1} {RNA815_13045}
2. MligTC455_04271 167 3.49 Mlig455_046505

Neo: -

Age: Up-Down-Down

 3.708 0.964 0.995 0.852 - - 0.897 Mlig455_046505 {REF} {Length: 4508} {RNA1509_35152} {RNA1310_3240.1} {RNA815_13045}
3. MligTC455_22681 528 11.01 Mlig455_025576

Neo: -

Age: Down-Down-Down

 FBXL8 1.867 - - - 0.898 - 0.969 Mlig455_025576 {REF} {Length: 2321} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=24.9]; F-box domain [PF00646.35, score=21.8]} {Human: ENSG00000135722, FBXL8, F-box and leucine rich repeat protein 8, [RH, Score=89.0, Expect=7e-19]} {Mouse: ENSMUSG00000033313, Fbxl8, F-box and leucine-rich repeat protein 8, [RH, Score=109, Expect=5e-26]} {RNA1509_12536, RNA1509_38251} {RNA1310_7458.1, RNA1509_12536, RNA1509_38251} {RNA1509_12536, RNA1509_38251, RNA815_12183}
4. MligTC455_52077 958 19.95 Mlig455_002776, Mlig455_006834, Mlig455_055155

Neo: -

Age: -

 NXF1, NXF2, NXF2B 1.768 - 0.962 - - - 0.806

Mlig455_002776 {REF} {Length: 3408} {Pfam: TAP C-terminal domain [PF03943.15, score=70.5]; Tap, RNA-binding [PF09162.12, score=66.9]; Leucine Rich repeats (2 copies) [PF12799.9, score=21.4]} {Human: ENSG00000162231, NXF1, nuclear RNA export factor 1, [RH, Score=229, Expect=2e-66]; ENSG00000269405, NXF2, nuclear RNA export factor 2, [RH, Score=228, Expect=1e-65]; ENSG00000269437, NXF2B, nuclear RNA export factor 2B, [RH, Score=228, Expect=1e-65]} {Mouse: ENSMUSG00000010097, Nxf1, nuclear RNA export factor 1, [RH, Score=228, Expect=7e-66]} {Dmel: FBgn0003321, sbr, small bristles, [RH, Score=207, Expect=6e-58]} {Celegans: WBGene00003834, nxf-1, Nuclear RNA export factor 1, [RH, Score=138, Expect=3e-34]} {Smed: dd_Smed_v6_12265_0_1, dd_Smed_v6_12265_0_1, [RH, Score=166, Expect=3e-44]} {RNA1509_32141, RNA1509_39393, RNA1509_6988} {RNA1310_8445.2, RNA1509_32141, RNA1509_39393, RNA1509_6988} {RNA1509_32141, RNA1509_39393, RNA1509_6988, RNA815_4098.1}

Mlig455_006834 {REF} {Length: 682} {Pfam: TAP C-terminal domain [PF03943.15, score=34.4]} {Human: ENSG00000269405, NXF2, nuclear RNA export factor 2, [Score=66.2, Expect=2e-12]; ENSG00000269437, NXF2B, nuclear RNA export factor 2B, [Score=66.2, Expect=2e-12]} {Dmel: FBgn0003321, sbr, small bristles, [Score=57.8, Expect=6e-10]} {Smed: dd_Smed_v6_6082_0_1, dd_Smed_v6_6082_0_1, [Score=62.0, Expect=2e-11]} {RNA1509_58063} {RNA1310_8445.2} {RNA815_4098.1}

Mlig455_055155 {REF} {Length: 681} {Pfam: TAP C-terminal domain [PF03943.15, score=34.4]} {Human: ENSG00000269437, NXF2B, nuclear RNA export factor 2B, [Score=66.2, Expect=2e-12]; ENSG00000269405, NXF2, nuclear RNA export factor 2, [Score=66.2, Expect=2e-12]} {Dmel: FBgn0003321, sbr, small bristles, [Score=58.2, Expect=5e-10]} {Smed: dd_Smed_v6_6082_0_1, dd_Smed_v6_6082_0_1, [Score=61.6, Expect=2e-11]} {RNA1509_58063} {RNA1310_8445.2} {RNA815_4098.1}
5. MligTC455_09236 361 7.53 Mlig455_069872

Neo: -

Age: -

 1.66 - 0.950 - - 0.710 - Mlig455_069872 {REF} {Length: 971} {NoTransDecoderORF} {RNA1509_56890} {RNA1310_8409.1} {RNA815_29944}
6. MligTC455_39614 347 7.22 Mlig455_060077

Neo: -

Age: -

 0.975 - 0.975 - - - - Mlig455_060077 {REF} {Length: 243} {RNA1509_44026} {RNA1310_29358} {RNA815_40687}
7. MligTC455_07182 156 3.26 Mlig455_060033

Neo: -

Age: Down-Up-Up

 OXTR 0.964 - 0.964 - - - - Mlig455_060033 {REF} {Length: 1704} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=44.6]} {Human: ENSG00000180914, OXTR, oxytocin receptor, [Score=48.9, Expect=1e-05]} {Mouse: ENSMUSG00000049112, Oxtr, oxytocin receptor, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_27989_0_1, dd_Smed_v6_27989_0_1, [RH, Score=164, Expect=8e-47]} {RNA1310_22580} {RNA815_25223}
8. MligTC455_03749 236 4.92 Mlig455_059519

Neo: -

Age: -

 0.963 - 0.963 - - - - Mlig455_059519 {REF} {Length: 5414} {TRANSSPLICED} {Pfam: Conserved region of unknown function on GLTSCR protein [PF15249.8, score=23.9]} {Smed: dd_Smed_v6_9271_0_1, dd_Smed_v6_9271_0_1, [Score=56.2, Expect=6e-08]} {RNA1509_10963, RNA1509_40114} {RNA1310_4938, RNA1509_40114} {RNA1509_40114, RNA815_17417}
9. MligTC455_36086 1067 22.22 Mlig455_029146

Neo: -

Age: logFC(26M/2M)=-0.343

Regeneration-upregulated BL: 2.147

Regeneration-enriched BL: 2.147

 CA12 0.963 - 0.963 - - - - Mlig455_029146 {REF} {Length: 5294} {TRANSSPLICED} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=226.5]} {Human: ENSG00000074410, CA12, carbonic anhydrase 12, [Score=155, Expect=4e-44]; ENSG00000168748, CA7, carbonic anhydrase 7, [Score=154, Expect=2e-44]} {Mouse: ENSMUSG00000038526, Car14, carbonic anhydrase 14, [Score=161, Expect=1e-46]; ENSMUSG00000032373, Car12, carbonic anhydrase 12, [Score=159, Expect=2e-45]; ENSMUSG00000027562, Car2, carbonic anhydrase 2, [Score=154, Expect=9e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=142, Expect=4e-40]} {Celegans: WBGene00000281, cah-3, Putative carbonic anhydrase 3, [Score=124, Expect=1e-33]} {Smed: dd_Smed_v6_5784_0_1, dd_Smed_v6_5784_0_1, [Score=157, Expect=7e-46]} {RNA1509_20720, RNA1509_28119, RNA1509_34508, RNA1509_51922, RNA1509_60129} {RNA1310_14409, RNA1509_20720, RNA1509_34508, RNA1509_51922, RNA1509_60129} {RNA1509_20720, RNA1509_34508, RNA1509_51922, RNA1509_60129, RNA815_10315}
10. MligTC455_32077 240 4.99 Mlig455_032957

Neo: -

Age: -

 0.962 - 0.962 - - - - Mlig455_032957 {REF} {Length: 4172} {TRANSSPLICED} {RNA1509_19305, RNA1509_34564} {RNA1310_20429.1, RNA1509_19305, RNA1509_34564} {RNA1509_19305, RNA1509_34564, RNA815_7869}
11. MligTC455_08873 198 4.13 Mlig455_022707

Neo: -

Age: -

 0.96 - 0.960 - - - - Mlig455_022707 {REF} {Length: 1291} {NoTransDecoderORF} {RNA1509_54108} {RNA1310_112068, RNA1509_54108} {RNA1509_54108, RNA815_23859}
12. MligTC455_49431 1241 25.84 Mlig455_051496, Mlig455_051534

Neo: -

Age: logFC(26M/2M)=0.325

 IDE 0.96 - 0.960 - - - -

Mlig455_051496 {REF} {Length: 3313} {TRANSSPLICED} {Pfam: Middle or third domain of peptidase_M16 [PF16187.7, score=219.3]; Insulinase (Peptidase family M16) [PF00675.22, score=124.5]; Peptidase M16 inactive domain [PF05193.23, score=73.3]} {Human: ENSG00000119912, IDE, insulin degrading enzyme, [Score=639, Expect=0.0]} {Mouse: ENSMUSG00000111624, Ide, insulin degrading enzyme, [Score=636, Expect=0.0]; ENSMUSG00000056999, Ide, insulin degrading enzyme, [Score=636, Expect=0.0]} {Dmel: FBgn0001247, Ide, Insulin degrading metalloproteinase, [Score=624, Expect=0.0]} {Celegans: WBGene00018426, F44E7.4, [Score=504, Expect=1e-161]} {Smed: dd_Smed_v6_9500_1_1, dd_Smed_v6_9500_1_1, [Score=545, Expect=7e-178]} {RNA1509_42817} {RNA1310_5752} {RNA815_4207}

Mlig455_051534 {REF} {Length: 3350} {TRANSSPLICED} {Pfam: Middle or third domain of peptidase_M16 [PF16187.7, score=218.1]; Insulinase (Peptidase family M16) [PF00675.22, score=124.5]; Peptidase M16 inactive domain [PF05193.23, score=74.0]} {Human: ENSG00000119912, IDE, insulin degrading enzyme, [Score=648, Expect=0.0]} {Mouse: ENSMUSG00000056999, Ide, insulin degrading enzyme, [Score=643, Expect=0.0]; ENSMUSG00000111624, Ide, insulin degrading enzyme, [Score=643, Expect=0.0]} {Dmel: FBgn0001247, Ide, Insulin degrading metalloproteinase, [Score=627, Expect=0.0]} {Celegans: WBGene00018426, F44E7.4, [Score=517, Expect=1e-166]} {Smed: dd_Smed_v6_9500_1_1, dd_Smed_v6_9500_1_1, [Score=555, Expect=0.0]} {RNA1509_42817, RNA1509_52505} {RNA1310_5752, RNA1509_52505} {RNA1509_52505, RNA815_4207}
13. MligTC455_49283 671 13.99 Mlig455_001528, Mlig455_046576

Neo: Int S/G2/M

Age: -

Region-enriched R2: 1.859/0.02944

 MMACHC 0.959 - 0.959 - - - -

Mlig455_001528 {REF} {Length: 1838} {TRANSSPLICED} {Pfam: Methylmalonic aciduria and homocystinuria type C family [PF16690.7, score=156.7]} {Human: ENSG00000132763, MMACHC, methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria, [RH, Score=130, Expect=1e-35]} {Mouse: ENSMUSG00000028690, Mmachc, methylmalonic aciduria cblC type, with homocystinuria, [RH, Score=130, Expect=4e-36]} {Smed: dd_Smed_v6_8584_0_1, dd_Smed_v6_8584_0_1, [RH, Score=114, Expect=3e-30]} {RNA1509_29990, RNA1509_42294} {RNA1310_36622, RNA1509_29990, RNA1509_42294} {RNA1509_29990, RNA1509_42294, RNA815_18456}

Mlig455_046576 {REF} {Length: 1840} {TRANSSPLICED} {Pfam: Methylmalonic aciduria and homocystinuria type C family [PF16690.7, score=157.4]} {Human: ENSG00000132763, MMACHC, methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria, [RH, Score=132, Expect=2e-36]} {Mouse: ENSMUSG00000028690, Mmachc, methylmalonic aciduria cblC type, with homocystinuria, [RH, Score=132, Expect=6e-37]} {Smed: dd_Smed_v6_8584_0_1, dd_Smed_v6_8584_0_1, [RH, Score=114, Expect=6e-30]} {RNA1509_29990, RNA1509_35509, RNA1509_39634} {RNA1310_36622, RNA1509_35509, RNA1509_39634} {RNA1509_35509, RNA1509_39634, RNA815_18456}
14. MligTC455_15784 370 7.7 Mlig455_029287

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_029287 {REF} {Length: 1928} {Pfam: TIR domain [PF13676.8, score=46.2]} {Smed: dd_Smed_v6_13404_0_1, dd_Smed_v6_13404_0_1, [Score=112, Expect=2e-26]} {RNA1509_41551} {RNA1310_16315, RNA1509_41551} {RNA1509_41551, RNA815_7731}
15. MligTC455_20760 943 19.64 Mlig455_008389, Mlig455_018262

Neo: -

Age: -

Region-enriched R5: 1.012/0.04902

 MICAL3 0.958 - 0.958 - - - -

Mlig455_008389 {REF} {Length: 8187} {TRANSSPLICED} {Pfam: Bivalent Mical/EHBP Rab binding domain [PF12130.10, score=31.4]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=25.4]; FAD binding domain [PF01494.21, score=25.2]; FAD dependent oxidoreductase [PF01266.26, score=24.1]; LIM domain [PF00412.24, score=22.5]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=22.2]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=21.8]; Pyridine nucleotide-disulphide oxidoreductase [PF13738.8, score=19.9]; HI0933-like protein [PF03486.16, score=18.7]} {Human: ENSG00000243156, MICAL3, microtubule associated monooxygenase, calponin and LIM domain containing 3, [RH, Score=555, Expect=6e-164]; ENSG00000133816, MICAL2, microtubule associated monooxygenase, calponin and LIM domain containing 2, [RH, Score=546, Expect=4e-170]} {Mouse: ENSMUSG00000051586, Mical3, microtubule associated monooxygenase, calponin and LIM domain containing 3, [RH, Score=573, Expect=0.0]} {Dmel: FBgn0053208, Mical, Molecule interacting with CasL, [RH, Score=548, Expect=6e-159]} {Smed: dd_Smed_v6_8586_0_1, dd_Smed_v6_8586_0_1, [RH, Score=519, Expect=2e-154]} {RNA1509_10546} {RNA1310_1868.1, RNA1509_10546} {RNA1509_10546, RNA815_1544}

Mlig455_018262 {REF} {Length: 8687} {TRANSSPLICED} {Pfam: Bivalent Mical/EHBP Rab binding domain [PF12130.10, score=31.1]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=25.4]; FAD binding domain [PF01494.21, score=25.3]; FAD dependent oxidoreductase [PF01266.26, score=23.3]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=22.8]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=22.8]; LIM domain [PF00412.24, score=22.5]; Pyridine nucleotide-disulphide oxidoreductase [PF13738.8, score=20.0]; HI0933-like protein [PF03486.16, score=18.8]} {Human: ENSG00000243156, MICAL3, microtubule associated monooxygenase, calponin and LIM domain containing 3, [RH, Score=566, Expect=5e-177]; ENSG00000133816, MICAL2, microtubule associated monooxygenase, calponin and LIM domain containing 2, [RH, Score=546, Expect=3e-170]} {Mouse: ENSMUSG00000051586, Mical3, microtubule associated monooxygenase, calponin and LIM domain containing 3, [RH, Score=599, Expect=1e-179]} {Dmel: FBgn0053208, Mical, Molecule interacting with CasL, [RH, Score=551, Expect=5e-160]} {Smed: dd_Smed_v6_8586_0_1, dd_Smed_v6_8586_0_1, [RH, Score=521, Expect=3e-155]} {RNA1509_10546, RNA1509_49461} {RNA1310_1868.1, RNA1509_49461} {RNA1509_49461, RNA815_1544}
16. MligTC455_23425 785 16.36 Mlig455_018886, Mlig455_064944

Neo: -

Age: logFC(26M/2M)=0.273

 DYRK1A, DYRK1B 0.958 - 0.958 - - - -

Mlig455_018886 {REF} {Length: 5241} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=152.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=71.9]} {Human: ENSG00000281320, DYRK1B, dual specificity tyrosine phosphorylation regulated kinase 1B, [Score=519, Expect=5e-179]; ENSG00000105204, DYRK1B, dual specificity tyrosine phosphorylation regulated kinase 1B, [Score=519, Expect=5e-179]; ENSG00000157540, DYRK1A, dual specificity tyrosine phosphorylation regulated kinase 1A, [Score=519, Expect=5e-177]} {Mouse: ENSMUSG00000022897, Dyrk1a, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a, [Score=520, Expect=6e-178]; ENSMUSG00000002409, Dyrk1b, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b, [Score=518, Expect=6e-179]} {Dmel: FBgn0259168, mnb, minibrain, [Score=512, Expect=5e-177]} {Celegans: WBGene00003149, mbk-1, Dual specificity tyrosine-phosphorylation-regulated kinase mbk-1, [Score=417, Expect=2e-136]} {Smed: dd_Smed_v6_3773_0_1, dd_Smed_v6_3773_0_1, [Score=444, Expect=4e-144]} {RNA1509_14800, RNA1509_19708, RNA1509_26668, RNA1509_36925, RNA1509_46144} {RNA1310_13710, RNA1509_14800, RNA1509_19708, RNA1509_26668, RNA1509_36925, RNA1509_46144} {RNA1509_14800, RNA1509_19708, RNA1509_26668, RNA1509_36925, RNA1509_46144, RNA815_9857}

Mlig455_064944 {REF} {Length: 5646} {Pfam: Protein kinase domain [PF00069.27, score=152.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=71.9]} {Human: ENSG00000157540, DYRK1A, dual specificity tyrosine phosphorylation regulated kinase 1A, [Score=519, Expect=1e-177]; ENSG00000281320, DYRK1B, dual specificity tyrosine phosphorylation regulated kinase 1B, [Score=519, Expect=4e-179]; ENSG00000105204, DYRK1B, dual specificity tyrosine phosphorylation regulated kinase 1B, [Score=519, Expect=4e-179]} {Mouse: ENSMUSG00000022897, Dyrk1a, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a, [Score=520, Expect=3e-178]; ENSMUSG00000002409, Dyrk1b, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b, [Score=519, Expect=5e-179]} {Dmel: FBgn0259168, mnb, minibrain, [Score=512, Expect=7e-177]} {Celegans: WBGene00003149, mbk-1, Dual specificity tyrosine-phosphorylation-regulated kinase mbk-1, [Score=417, Expect=2e-136]} {Smed: dd_Smed_v6_3773_0_1, dd_Smed_v6_3773_0_1, [Score=444, Expect=4e-144]} {RNA1509_14800} {RNA1310_13710} {RNA815_9857}
17. MligTC455_46362 447 9.31 Mlig455_020205

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_020205 {REF} {Length: 2225} {Pfam: Universal stress protein family [PF00582.28, score=77.6]} {Smed: dd_Smed_v6_3502_0_1, dd_Smed_v6_3502_0_1, [Score=93.2, Expect=1e-22]} {RNA1509_57267} {RNA1310_30614.1} {RNA815_47657}
18. MligTC455_19672 631 13.14 Mlig455_043272

Neo: -

Age: -

 0.957 - 0.957 - - - - Mlig455_043272 {REF} {Length: 2079} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=66.1]} {Mouse: ENSMUSG00000035941, Ibtk, inhibitor of Bruton agammaglobulinemia tyrosine kinase, [Score=50.1, Expect=4e-06]} {Dmel: FBgn0030961, CG7058, [Score=59.7, Expect=3e-09]} {Celegans: WBGene00018137, bath-41, BTB and MATH domain-containing protein 41, [Score=48.1, Expect=8e-06]} {Smed: dd_Smed_v6_7778_0_1, dd_Smed_v6_7778_0_1, [Score=73.9, Expect=4e-14]} {RNA1509_8768} {RNA1310_15058, RNA1509_8768} {RNA1509_8768, RNA815_8239}
19. MligTC455_43119 905 18.85 Mlig455_025240, Mlig455_025624

Neo: -

Age: -

 0.957 - 0.957 - - - -

Mlig455_025240 {REF} {Length: 4336} {RNA1509_20151} {RNA1310_8688.1} {RNA815_9458.1}

Mlig455_025624 {REF} {Length: 4543} {RNA1509_20151} {RNA1310_8688.1} {RNA815_9458.1}
20. MligTC455_15566 1057 22.03 Mlig455_004932, Mlig455_019726

Neo: -

Age: -

 TOP2B 0.956 - 0.956 - - - -

Mlig455_004932 {REF} {Length: 4310} {TRANSSPLICED} {Pfam: DNA gyrase/topoisomerase IV, subunit A [PF00521.22, score=330.3]; C-terminal associated domain of TOPRIM [PF16898.7, score=70.3]; DNA gyrase B [PF00204.27, score=54.0]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=45.7]} {Human: ENSG00000077097, TOP2B, DNA topoisomerase II beta, [Score=874, Expect=0.0]; ENSG00000131747, TOP2A, DNA topoisomerase II alpha, [Score=872, Expect=0.0]} {Mouse: ENSMUSG00000017485, Top2b, topoisomerase (DNA) II beta, [Score=878, Expect=0.0]; ENSMUSG00000020914, Top2a, topoisomerase (DNA) II alpha, [Score=876, Expect=0.0]} {Dmel: FBgn0284220, Top2, Topoisomerase 2, [Score=890, Expect=0.0]} {Celegans: WBGene00010785, top-2, Probable DNA topoisomerase 2, [Score=796, Expect=0.0]} {Smed: dd_Smed_v6_1626_0_3, dd_Smed_v6_1626_0_3, [Score=856, Expect=0.0]} {RNA1509_50365, RNA1509_8869} {RNA1310_2021, RNA1509_50365} {RNA1509_50365, RNA815_838}

Mlig455_019726 {REF} {Length: 4322} {TRANSSPLICED} {Pfam: DNA gyrase/topoisomerase IV, subunit A [PF00521.22, score=330.3]; C-terminal associated domain of TOPRIM [PF16898.7, score=70.3]; DNA gyrase B [PF00204.27, score=54.0]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=44.4]} {Human: ENSG00000077097, TOP2B, DNA topoisomerase II beta, [Score=872, Expect=0.0]; ENSG00000131747, TOP2A, DNA topoisomerase II alpha, [Score=870, Expect=0.0]} {Mouse: ENSMUSG00000017485, Top2b, topoisomerase (DNA) II beta, [Score=875, Expect=0.0]; ENSMUSG00000020914, Top2a, topoisomerase (DNA) II alpha, [Score=874, Expect=0.0]} {Dmel: FBgn0284220, Top2, Topoisomerase 2, [Score=889, Expect=0.0]} {Celegans: WBGene00010785, top-2, Probable DNA topoisomerase 2, [Score=793, Expect=0.0]} {Smed: dd_Smed_v6_1626_0_3, dd_Smed_v6_1626_0_3, [Score=853, Expect=0.0]} {RNA1509_8869} {RNA1310_2021, RNA1509_8869} {RNA1509_8869, RNA815_838}
21. MligTC455_23424 374 7.8 Mlig455_018677

Neo: -

Age: -

 0.956 - 0.956 - - - - Mlig455_018677 {REF} {Length: 3159} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=44.7, Expect=1e-05]} {RNA1509_19708} {RNA1310_22284.1} {RNA815_9857}
22. MligTC455_17828 147 3.07 Mlig455_047212

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.512/0.02591

 KEAP1 0.955 - 0.955 - - - - Mlig455_047212 {REF} {Length: 5896} {TRANSSPLICED} {Pfam: Kelch motif [PF01344.27, score=245.0]; Kelch motif [PF13964.8, score=142.1]; BTB/POZ domain [PF00651.33, score=102.0]; BTB And C-terminal Kelch [PF07707.17, score=95.6]; Kelch motif [PF07646.17, score=90.7]; Galactose oxidase, central domain [PF13415.8, score=84.8]; Galactose oxidase, central domain [PF13418.8, score=83.7]; Kelch motif [PF13854.8, score=44.1]} {Human: ENSG00000079999, KEAP1, kelch like ECH associated protein 1, [RH, Score=466, Expect=3e-157]} {Mouse: ENSMUSG00000003308, Keap1, kelch-like ECH-associated protein 1, [RH, Score=464, Expect=1e-156]} {Dmel: FBgn0038475, Keap1, [RH, Score=500, Expect=1e-168]} {Celegans: WBGene00020030, R12E2.1, [Score=310, Expect=1e-97]} {Smed: dd_Smed_v6_1751_0_1, dd_Smed_v6_1751_0_1, [RH, Score=591, Expect=0.0]} {RNA1509_23206, RNA1509_56388} {RNA1310_11416, RNA1509_23206, RNA1509_56388} {RNA1509_23206, RNA1509_56388, RNA815_19307}
23. MligTC455_27539 594 12.37 Mlig455_044450

Neo: -

Age: -

 ANKRD44 0.955 - 0.955 - - - - Mlig455_044450 {REF} {Length: 18303} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=294.6]; Ankyrin repeats (many copies) [PF13637.8, score=213.3]; Ankyrin repeat [PF13606.8, score=144.6]; Ankyrin repeats (many copies) [PF13857.8, score=135.0]; Ankyrin repeat [PF00023.32, score=92.5]; PT repeat [PF04886.14, score=78.5]} {Human: ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=122, Expect=3e-27]} {Mouse: ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=111, Expect=4e-24]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=104, Expect=5e-22]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=96.3, Expect=1e-19]} {Smed: dd_Smed_v6_13721_0_1, dd_Smed_v6_13721_0_1, [Score=118, Expect=1e-26]} {RNA1509_28032} {RNA1310_2236, RNA1509_28032} {RNA1509_28032, RNA815_397.1}
24. MligTC455_42952 1133 23.6 Mlig455_038557

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.656

Region-enriched R4: 1.639/0.00071

 0.953 - 0.953 - - - - Mlig455_038557 {REF} {Length: 1484} {TRANSSPLICED} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=40.2]} {RNA1509_10373} {RNA1310_14044.2, RNA1509_10373} {RNA1509_10373, RNA815_9326.1}
25. MligTC455_25285 69 1.43 Mlig455_056009

Neo: -

Age: -

 PCDH9 0.952 - 0.952 - - - - Mlig455_056009 {REF} {Length: 4817} {Pfam: Cadherin domain [PF00028.19, score=173.0]; Cadherin-like [PF16184.7, score=24.5]; Cadherin-like [PF08266.14, score=21.0]} {Human: ENSG00000184226, PCDH9, protocadherin 9, [Score=211, Expect=5e-55]} {Mouse: ENSMUSG00000055421, Pcdh9, protocadherin 9, [Score=211, Expect=2e-55]} {Dmel: FBgn0024836, stan, starry night, [Score=176, Expect=5e-44]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=143, Expect=3e-34]} {Smed: dd_Smed_v6_21207_0_1, dd_Smed_v6_21207_0_1, [RH, Score=294, Expect=1e-83]} {RNA1509_58565} {RNA1310_1772} {RNA815_3280}
26. MligTC455_42954 1129 23.53 Mlig455_053452

Neo: -

Age: -

Region-enriched R4: 1.661/0.00062

 0.95 - 0.950 - - - - Mlig455_053452 {REF} {Length: 1459} {TRANSSPLICED} {RNA1509_10373} {RNA1310_14044.1} {RNA815_9326.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA