TomoSeq data search

Data search

Results for MligTC455_04751

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_04751

4

0.07

Mlig455_067049

Neo: -

Age: -

GRIK1

Mlig455_067049 {REF} {Length: 1036} {Pfam: Receptor family ligand binding region [PF01094.30, score=21.4]} {Human: ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=49.7, Expect=3e-06]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=49.7, Expect=3e-06]} {RNA1310_11982.1}

Cumulative graph for MligTC455_04751

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_04751

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_04751	4	0.07	Mlig455_067049	Neo: - Age: -	GRIK1	1	-	-	-	-	1.000	-	Mlig455_067049 {REF} {Length: 1036} {Pfam: Receptor family ligand binding region [PF01094.30, score=21.4]} {Human: ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=49.7, Expect=3e-06]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=49.7, Expect=3e-06]} {RNA1310_11982.1}
2.	MligTC455_40707	15	0.31	Mlig455_033559, Mlig455_067009	Neo: - Age: -	GRIK2	1	-	-	-	-	1.000	-	Mlig455_033559 {REF} {Length: 3723} {tRNA: Val(CAC),pseudo, score=30.0} {Pfam: Ligand-gated ion channel [PF00060.28, score=144.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=101.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=66.3]; Receptor family ligand binding region [PF01094.30, score=22.9]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=325, Expect=4e-97]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=318, Expect=2e-94]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=309, Expect=8e-91]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=323, Expect=2e-96]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=316, Expect=2e-93]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=310, Expect=3e-92]} {Dmel: FBgn0038837, CG3822, [Score=292, Expect=2e-85]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=252, Expect=8e-71]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=357, Expect=2e-108]} {RNA1310_11982.1} {RNA815_20096} Mlig455_067009 {REF} {Length: 2583} {Pfam: Ligand-gated ion channel [PF00060.28, score=121.5]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=101.3]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=46.3]; Receptor family ligand binding region [PF01094.30, score=22.3]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=267, Expect=1e-76]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=265, Expect=2e-75]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=260, Expect=7e-74]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=267, Expect=1e-76]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=262, Expect=1e-74]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=259, Expect=2e-74]} {Dmel: FBgn0038837, CG3822, [Score=234, Expect=2e-65]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=208, Expect=2e-56]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=281, Expect=2e-81]} {RNA1310_11982.1} {RNA815_20096}
3.	MligTC455_30569	28	0.58	Mlig455_016003	Neo: - Age: - Region-enriched R7: 4.707/0.01972 Region-enriched R2: 3.988/0.03045		0.959	-	-	-	-	0.959	-	Mlig455_016003 {REF} {Length: 5177} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=107.6]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=106.9]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=146, Expect=2e-42]} {RNA1509_27182, RNA1509_8906} {RNA1310_1712.3, RNA1509_27182} {RNA1509_27182, RNA815_474.1}
4.	MligTC455_34586	184	3.84	Mlig455_055029	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.460 Region-enriched R2: 3.711/0.00138 Region-enriched R3: 2.595/0.02542	SMTN	0.956	-	-	-	-	0.956	-	Mlig455_055029 {REF} {Length: 5364} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=101.5]; Immunoglobulin domain [PF13927.8, score=72.4]; Calponin homology (CH) domain [PF00307.33, score=70.5]; Immunoglobulin V-set domain [PF07686.19, score=39.8]; Immunoglobulin domain [PF00047.27, score=33.5]; Smoothelin cytoskeleton protein [PF12510.10, score=31.4]; CAMSAP CH domain [PF11971.10, score=30.9]; Immunoglobulin domain [PF13895.8, score=30.1]; Natural killer cell receptor 2B4 [PF11465.10, score=22.5]} {Human: ENSG00000183963, SMTN, smoothelin, [Score=159, Expect=6e-40]} {Mouse: ENSMUSG00000020439, Smtn, smoothelin, [Score=150, Expect=9e-39]} {Dmel: FBgn0085446, CG34417, [RH, Score=163, Expect=3e-41]} {Celegans: WBGene00020530, T15B12.1, [Score=134, Expect=8e-34]} {Smed: dd_Smed_v6_6934_0_1, dd_Smed_v6_6934_0_1, [RH, Score=169, Expect=1e-45]} {RNA1509_3882, RNA1509_55382} {RNA1310_786, RNA1509_55382} {RNA1509_55382, RNA815_238.1}
5.	MligTC455_55615	9	0.18	Mlig455_002937	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_002937 {REF} {Length: 373} {NoTransDecoderORF}

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