M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_05019

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_05019 2 0.03 Mlig455_025042

Neo: -

Age: -

 Mlig455_025042 {REF} {Length: 327} {NoTransDecoderORF} {RNA1310_70485} {RNA815_35724}

Cumulative graph for MligTC455_05019

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_05019

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_05019 2 0.03 Mlig455_025042

Neo: -

Age: -

 1 1.000 - - - - - Mlig455_025042 {REF} {Length: 327} {NoTransDecoderORF} {RNA1310_70485} {RNA815_35724}
2. MligTC455_09347 9 0.18 Mlig455_030791

Neo: -

Age: -

 1 1.000 - - - - - Mlig455_030791 {REF} {Length: 1222} {RNA1509_25061} {RNA1310_41174} {RNA815_24984}
3. MligTC455_19992 84 1.75 Mlig455_015924

Neo: Germline

Age: Up-Down-Down

Regeneration-enriched R4: 7.007

 KLHL10 1 1.000 - - - - - Mlig455_015924 {REF} {Length: 2626} {Pfam: Kelch motif [PF01344.27, score=49.3]; BTB And C-terminal Kelch [PF07707.17, score=40.6]; Kelch motif [PF07646.17, score=25.3]; Kelch motif [PF13964.8, score=18.8]} {Human: ENSG00000161594, KLHL10, kelch like family member 10, [Score=68.6, Expect=2e-11]; ENSG00000114796, KLHL24, kelch like family member 24, [Score=66.6, Expect=6e-11]} {Mouse: ENSMUSG00000044938, Klhl31, kelch-like 31, [Score=82.4, Expect=6e-16]} {Dmel: FBgn0001301, kel, kelch, [Score=63.2, Expect=5e-10]} {Smed: dd_Smed_v6_1751_0_1, dd_Smed_v6_1751_0_1, [Score=53.9, Expect=2e-07]} {RNA1509_22536} {RNA1310_7097} {RNA815_20881}
4. MligTC455_34019 1 0.03 Mlig455_062196

Neo: -

Age: -

 0.999 0.999 - - - - - Mlig455_062196 {REF} {Length: 778} {NoTransDecoderORF}
5. MligTC455_00190 2 0.05 Mlig455_014771

Neo: -

Age: -

 0.998 0.998 - - - - - Mlig455_014771 {REF} {Length: 96} {NoTransDecoderORF} {RNA1509_30600} {RNA1310_45937} {RNA815_24183.1}
6. MligTC455_01510 11 0.22 Mlig455_022372

Neo: -

Age: -

Region-enriched R4: 7.021/0.00089

 0.991 0.991 - - - - - Mlig455_022372 {REF} {Length: 718} {RNA1509_30295} {RNA1310_47656} {RNA815_19006.1}
7. MligTC455_13806 27 0.55 Mlig455_038625

Neo: Irradiation

Age: Up-Down-Down

 0.99 0.990 - - - - - Mlig455_038625 {REF} {Length: 1723} {Pfam: WSC domain [PF01822.21, score=45.2]} {RNA1509_9211} {RNA1310_21071.1} {RNA815_8497}
8. MligTC455_06604 25 0.52 Mlig455_020786

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.598

 KREMEN1 0.988 0.988 - - - - - Mlig455_020786 {REF} {Length: 1762} {Pfam: WSC domain [PF01822.21, score=65.2]} {Human: ENSG00000183762, KREMEN1, kringle containing transmembrane protein 1, [Score=56.2, Expect=3e-09]} {Mouse: ENSMUSG00000020393, Kremen1, kringle containing transmembrane protein 1, [Score=58.5, Expect=3e-10]} {RNA1509_36914, RNA1509_47848} {RNA1310_9932.1, RNA1509_47848} {RNA1509_47848, RNA815_31064}
9. MligTC455_03327 13 0.28 Mlig455_031640

Neo: Irradiation

Age: Up-Down-Down

 0.985 0.985 - - - - - Mlig455_031640 {REF} {Length: 1631} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=19.8]} {RNA1310_16409} {RNA815_28638}
10. MligTC455_06998 21 0.44 Mlig455_000331, Mlig455_004164

Neo: -

Age: -

Region-enriched R4: 4.362/0.00332

 0.982 0.982 - - - - -

Mlig455_000331 {REF} {Length: 840} {NoTransDecoderORF} {RNA1310_100060} {RNA815_55594}

Mlig455_004164 {REF} {Length: 229} {NoTransDecoderORF} {RNA1310_83082} {RNA815_55594}
11. MligTC455_16474 22 0.45 Mlig455_025196, Mlig455_029879

Neo: -

Age: -

Region-enriched R4: 6.273/0.01003

 0.981 0.981 - - - - -

Mlig455_025196 {REF} {Length: 729} {RNA1509_23706} {RNA1310_77009} {RNA815_30456.1}

Mlig455_029879 {REF} {Length: 729} {RNA1509_23706} {RNA1310_77009} {RNA815_30456.1}
12. MligTC455_24527 9 0.18 Mlig455_034489

Neo: Int S/G2/M

Age: -

 KCTD1 0.981 0.981 - - - - - Mlig455_034489 {REF} {Length: 4655} {Pfam: Phage integrase family [PF00589.24, score=37.1]; Domain of unknown function (DUF3504) [PF12012.10, score=22.1]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=57.4, Expect=2e-08]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=57.8, Expect=1e-08]} {RNA1509_46426} {RNA1310_11609} {RNA815_14050}
13. MligTC455_00915 4 0.09 Mlig455_032896

Neo: -

Age: -

 0.976 0.976 - - - - - Mlig455_032896 {REF} {Length: 525} {NoTransDecoderORF} {RNA1509_36146} {RNA1310_101784} {RNA815_48411}
14. MligTC455_28379 18 0.37 Mlig455_011163

Neo: Germline

Age: -

 0.976 0.976 - - - - - Mlig455_011163 {REF} {Length: 1556} {tRNA: Ser(AGA), score=94.9} {Pfam: Myb/SANT-like DNA-binding domain [PF13873.8, score=30.0]} {RNA1509_31312} {RNA1310_80791} {RNA815_42151}
15. MligTC455_00271 4 0.08 Mlig455_008198

Neo: -

Age: -

 0.975 0.975 - - - - - Mlig455_008198 {REF} {Length: 284} {NoTransDecoderORF} {RNA815_40467}
16. MligTC455_00860 1 0.02 Mlig455_060927

Neo: -

Age: -

 0.972 0.972 - - - - - Mlig455_060927 {REF} {Length: 738} {RNA1509_2330} {RNA1310_7644.2} {RNA815_56240}
17. MligTC455_03239 2 0.04 Mlig455_022456

Neo: -

Age: -

 0.972 0.972 - - - - - Mlig455_022456 {REF} {Length: 565} {NoTransDecoderORF} {RNA1310_139206}
18. MligTC455_06069 10 0.21 Mlig455_045634, Mlig455_045680

Neo: -

Age: -

 0.972 0.972 - - - - -

Mlig455_045634 {REF} {Length: 756} {NoTransDecoderORF} {RNA1310_113109}

Mlig455_045680 {REF} {Length: 659} {NoTransDecoderORF} {RNA1310_113109}
19. MligTC455_15744 10 0.2 Mlig455_004416, Mlig455_037236, Mlig455_037248

Neo: -

Age: logFC(26M/2M)=5.885

 0.972 0.972 - - - - -

Mlig455_004416 {REF} {Length: 566} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=30.7]} {RNA1310_74857} {RNA815_44109}

Mlig455_037236 {REF} {Length: 597} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=30.7]} {RNA1310_74857} {RNA815_44109}

Mlig455_037248 {REF} {Length: 572} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=28.8]} {RNA1310_74857} {RNA815_44109}
20. MligTC455_23636 15 0.31 Mlig455_007002

Neo: -

Age: -

 KCTD1 0.972 0.972 - - - - - Mlig455_007002 {REF} {Length: 2735} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=69.3, Expect=7e-12]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=68.2, Expect=9e-12]} {RNA1509_46642} {RNA1310_7864} {RNA815_30316}
21. MligTC455_05978 20 0.42 Mlig455_000159, Mlig455_000172

Neo: -

Age: -

 0.971 0.971 - - - - -

Mlig455_000159 {REF} {Length: 914} {RNA1509_2330} {RNA1310_37520} {RNA815_22367}

Mlig455_000172 {REF} {Length: 910} {RNA1509_2330} {RNA1310_37520} {RNA815_22367}
22. MligTC455_44680 1 0.03 Mlig455_013885

Neo: -

Age: -

 0.969 0.969 - - - - - Mlig455_013885 {REF} {Length: 4859} {RNA1509_50258} {RNA1310_36136} {RNA815_18097}
23. MligTC455_20830 20 0.42 Mlig455_028482, Mlig455_028509

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.579

 0.963 0.963 - - - - -

Mlig455_028482 {REF} {Length: 1511} {Smed: dd_Smed_v6_1574_6_40, dd_Smed_v6_1574_6_40, [Score=44.3, Expect=1e-06]} {RNA1509_29748} {RNA1310_37473} {RNA815_993.1}

Mlig455_028509 {REF} {Length: 2750} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=41.2, Expect=5e-06]} {RNA1509_29748} {RNA1310_37473} {RNA815_38075}
24. MligTC455_55671 21 0.44 Mlig455_040200

Neo: -

Age: -

 0.963 0.963 - - - - - Mlig455_040200 {REF} {Length: 313} {NoTransDecoderORF}
25. MligTC455_27127 21 0.44 Mlig455_006501

Neo: -

Age: Up-Down-Down

 SETMAR 0.96 0.960 - - - - - Mlig455_006501 {REF} {Length: 1980} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=49.4]; Homeodomain-like domain [PF13565.8, score=34.1]; HTH domain in Mos1 transposase [PF17906.3, score=28.7]; DDE superfamily endonuclease [PF13358.8, score=23.0]; Winged helix-turn helix [PF13551.8, score=19.8]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=201, Expect=3e-59]} {Smed: dd_Smed_v6_13618_0_23, dd_Smed_v6_13618_0_23, [Score=73.9, Expect=2e-16]} {RNA1509_31473} {RNA1310_29714} {RNA815_20842.1}
26. MligTC455_38095 28 0.57 Mlig455_049600

Neo: -

Age: Down-Up-Up

Region-enriched R4: 5.085/0.00060

 0.96 0.960 - - - - - Mlig455_049600 {REF} {Length: 815} {NoTransDecoderORF} {RNA1509_44100} {RNA1310_37659} {RNA815_4111.3}
27. MligTC455_21941 57 1.2 Mlig455_005337, Mlig455_008287, Mlig455_042435, Mlig455_042486

Neo: -

Age: Down-Up-Down

 0.959 0.959 - - - - -

Mlig455_005337 {REF} {Length: 1085} {RNA1310_43853} {RNA815_33228}

Mlig455_008287 {REF} {Length: 716} {Pfam: Phage integrase family [PF00589.24, score=27.0]} {RNA1310_43853} {RNA815_33228}

Mlig455_042435 {REF} {Length: 1075} {Pfam: Phage integrase family [PF00589.24, score=24.5]} {RNA1310_28668} {RNA815_33228}

Mlig455_042486 {REF} {Length: 1073} {Pfam: Phage integrase family [PF00589.24, score=24.5]} {RNA1509_29315} {RNA1310_28668} {RNA815_33228}
28. MligTC455_11625 40 0.82 Mlig455_022146

Neo: -

Age: Up-Down-Down

 0.958 0.958 - - - - - Mlig455_022146 {REF} {Length: 1663} {RNA1310_67073}
29. MligTC455_10020 11 0.23 Mlig455_070721

Neo: Germline

Age: -

 0.956 0.956 - - - - - Mlig455_070721 {REF} {Length: 805} {RNA1509_51650} {RNA1310_57528} {RNA815_29777}
30. MligTC455_44681 11 0.23 Mlig455_057725

Neo: -

Age: Up-Down-Down

 0.956 0.956 - - - - - Mlig455_057725 {REF} {Length: 2691} {Pfam: Tetraspanin family [PF00335.22, score=37.2]} {Mouse: ENSMUSG00000025351, Cd63, CD63 antigen, [Score=47.4, Expect=6e-06]} {RNA1509_50258} {RNA1310_36136} {RNA815_18097}
31. MligTC455_06552 57 1.18 Mlig455_064225

Neo: Germline

Age: Up-Down-Down

Region-enriched R4: 3.812/0.00017

 0.955 0.955 - - - - - Mlig455_064225 {REF} {Length: 2375} {RNA1509_40295} {RNA1310_22504} {RNA815_24302}
32. MligTC455_03826 6 0.12 Mlig455_059571

Neo: -

Age: -

 0.953 0.953 - - - - - Mlig455_059571 {REF} {Length: 341} {NoTransDecoderORF}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA