M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_05187

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_05187 4 0.07 Mlig455_021417

Neo: -

Age: -

 Mlig455_021417 {REF} {Length: 911} {NoTransDecoderORF} {RNA1310_66512}

Cumulative graph for MligTC455_05187

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_05187

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_05187 4 0.07 Mlig455_021417

Neo: -

Age: -

 1 - - - - - 1.000 Mlig455_021417 {REF} {Length: 911} {NoTransDecoderORF} {RNA1310_66512}
2. MligTC455_13787 16 0.32 Mlig455_030903

Neo: -

Age: -

 0.993 - - - - - 0.993 Mlig455_030903 {REF} {Length: 2394} {NoTransDecoderORF} {RNA1509_39747} {RNA1310_36852} {RNA815_33592}
3. MligTC455_24099 11 0.23 Mlig455_007650

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_007650 {REF} {Length: 1423} {RNA1310_111576} {RNA815_14158.1}
4. MligTC455_07630 15 0.32 Mlig455_045140

Neo: -

Age: -

Region-enriched R6: 3.931/0.02346

 0.969 - - - - - 0.969 Mlig455_045140 {REF} {Length: 313} {NoTransDecoderORF} {RNA1310_36242}
5. MligTC455_09923 5 0.1 Mlig455_035172

Neo: -

Age: -

 RPS6KB1 0.969 - - - - - 0.969 Mlig455_035172 {REF} {Length: 2882} {Pfam: Protein kinase domain [PF00069.27, score=229.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.1]; Protein kinase C terminal domain [PF00433.26, score=41.4]; Kinase-like [PF14531.8, score=26.8]; ABC1 atypical kinase-like domain [PF03109.18, score=19.2]} {Human: ENSG00000108443, RPS6KB1, ribosomal protein S6 kinase B1, [Score=469, Expect=7e-163]; ENSG00000175634, RPS6KB2, ribosomal protein S6 kinase B2, [Score=454, Expect=2e-156]} {Mouse: ENSMUSG00000097721, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [RH, Score=448, Expect=4e-154]; ENSMUSG00000024830, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [RH, Score=448, Expect=4e-154]} {Dmel: FBgn0283472, S6k, Ribosomal protein S6 kinase, [RH, Score=464, Expect=2e-160]} {Celegans: WBGene00012929, rsks-1, Ribosomal protein S6 kinase beta, [Score=447, Expect=3e-153]} {Smed: dd_Smed_v6_5658_0_1, dd_Smed_v6_5658_0_1, [RH, Score=476, Expect=2e-165]} {RNA1509_6246} {RNA1310_5697.1, RNA1509_6246} {RNA1509_6246, RNA815_4897.1}
6. MligTC455_07629 17 0.35 Mlig455_014953

Neo: -

Age: -

Region-enriched R6: 4.061/0.02437

 0.967 - - - - - 0.967 Mlig455_014953 {REF} {Length: 384} {NoTransDecoderORF} {RNA1310_36242}
7. MligTC455_01701 8 0.16 Mlig455_024347, Mlig455_024464

Neo: -

Age: -

 0.966 - - - - - 0.966

Mlig455_024347 {REF} {Length: 553} {RNA1310_102456}

Mlig455_024464 {REF} {Length: 384} {RNA1310_102456}
8. MligTC455_09946 9 0.19 Mlig455_068386

Neo: -

Age: -

 ECE2 0.962 - - - - - 0.962 Mlig455_068386 {REF} {Length: 3943} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=127.5]; Peptidase family M13 [PF01431.23, score=111.7]; Peptidase family M13 [PF05649.15, score=23.9]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=84.0, Expect=1e-15]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=83.6, Expect=1e-15]; ENSG00000276615, KEL, Kell metallo-endopeptidase (Kell blood group), [Score=83.2, Expect=1e-15]; ENSG00000197993, KEL, Kell metallo-endopeptidase (Kell blood group), [Score=83.2, Expect=1e-15]} {Mouse: ENSMUSG00000029866, Kel, Kell blood group, [Score=91.3, Expect=3e-18]; ENSMUSG00000027820, Mme, membrane metallo endopeptidase, [Score=88.2, Expect=3e-17]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=96.3, Expect=7e-20]} {Celegans: WBGene00013926, nep-1, Neprilysin-1, [Score=87.0, Expect=3e-17]} {Smed: dd_Smed_v6_8276_0_1, dd_Smed_v6_8276_0_1, [Score=85.1, Expect=1e-16]} {RNA1310_10797} {RNA815_14357}
9. MligTC455_10013 5 0.1 Mlig455_047714

Neo: -

Age: -

 APLNR 0.962 - - - - - 0.962 Mlig455_047714 {REF} {Length: 1374} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=51.3]} {Human: ENSG00000134817, APLNR, apelin receptor, [Score=55.1, Expect=1e-07]; ENSG00000139874, SSTR1, somatostatin receptor 1, [Score=55.1, Expect=1e-07]; ENSG00000169403, PTAFR, platelet activating factor receptor, [Score=53.1, Expect=4e-07]} {Mouse: ENSMUSG00000056529, Ptafr, platelet-activating factor receptor, [Score=55.8, Expect=3e-08]; ENSMUSG00000035431, Sstr1, somatostatin receptor 1, [Score=55.5, Expect=5e-08]; ENSMUSG00000037014, Sstr4, somatostatin receptor 4, [Score=55.1, Expect=8e-08]} {Smed: dd_Smed_v6_35162_0_1, dd_Smed_v6_35162_0_1, [Score=47.8, Expect=8e-06]} {RNA1310_32818} {RNA815_43859}
10. MligTC455_05497 11 0.24 Mlig455_004363

Neo: Germline

Age: -

 0.957 - - - - - 0.957 Mlig455_004363 {REF} {Length: 1670} {RNA1509_36497} {RNA1310_33028.2} {RNA815_15751}
11. MligTC455_49188 2341 48.77 Mlig455_002269, Mlig455_002314

Neo: -

Age: -

Region-enriched R6: 6.536/0.00415

 0.956 - - - - - 0.956

Mlig455_002269 {REF} {Length: 959} {RNA1509_43329} {RNA1310_49486} {RNA815_5449}

Mlig455_002314 {REF} {Length: 1882} {RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1310_49486, RNA1509_18874, RNA1509_2814, RNA1509_43329} {RNA1509_18874, RNA1509_2814, RNA1509_43329, RNA815_5449}
12. MligTC455_21178 29 0.59 Mlig455_001203, Mlig455_066754, Mlig455_069710

Neo: -

Age: Down-Up-Down

 CCKAR, NPFFR1 0.952 - - - - - 0.952

Mlig455_001203 {REF} {Length: 4789} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=109.9]} {Human: ENSG00000163394, CCKAR, cholecystokinin A receptor, [Score=60.5, Expect=3e-09]; ENSG00000148734, NPFFR1, neuropeptide FF receptor 1, [Score=58.5, Expect=9e-09]} {Mouse: ENSMUSG00000020090, Npffr1, neuropeptide FF receptor 1, [Score=59.3, Expect=3e-09]; ENSMUSG00000019865, Nmbr, neuromedin B receptor, [Score=58.2, Expect=4e-09]; ENSMUSG00000029193, Cckar, cholecystokinin A receptor, [Score=56.6, Expect=3e-08]; ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=56.6, Expect=2e-08]} {Dmel: FBgn0038542, TyrR, Tyramine receptor, [Score=65.5, Expect=4e-11]} {Celegans: WBGene00004778, ser-3, SERotonin/octopamine receptor family, [Score=58.5, Expect=5e-09]} {Smed: dd_Smed_v6_43180_0_1, dd_Smed_v6_43180_0_1, [Score=72.4, Expect=4e-14]} {RNA1310_113134}

Mlig455_066754 {REF} {Length: 3197} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=84.3]} {Human: ENSG00000148734, NPFFR1, neuropeptide FF receptor 1, [Score=52.8, Expect=6e-07]} {Mouse: ENSMUSG00000020090, Npffr1, neuropeptide FF receptor 1, [Score=54.7, Expect=1e-07]} {Dmel: FBgn0038542, TyrR, Tyramine receptor, [Score=53.5, Expect=2e-07]} {Celegans: WBGene00006428, tkr-3, TachyKinin Receptor family, [Score=50.1, Expect=1e-06]} {Smed: dd_Smed_v6_16725_0_1, dd_Smed_v6_16725_0_1, [Score=52.8, Expect=2e-07]} {RNA1310_131269}

Mlig455_069710 {REF} {Length: 1208} {NoTransDecoderORF} {RNA1310_131269}
13. MligTC455_53897 30 0.62 Mlig455_018385

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_018385 {REF} {Length: 1831} {Pfam: Presenilin [PF01080.19, score=25.7]} {RNA1509_47157} {RNA1310_26868} {RNA815_54035}
14. MligTC455_23443 15 0.32 Mlig455_011642, Mlig455_011684, Mlig455_049907

Neo: -

Age: -

 ATG9A 0.95 - - - - - 0.950

Mlig455_011642 {REF} {Length: 3059} {TRANSSPLICED} {Pfam: Autophagy protein ATG9 [PF04109.18, score=148.4]} {Human: ENSG00000198925, ATG9A, autophagy related 9A, [Score=226, Expect=2e-66]} {Mouse: ENSMUSG00000033124, Atg9a, autophagy related 9A, [Score=227, Expect=1e-66]} {Dmel: FBgn0034110, Atg9, Autophagy-related 9, [Score=182, Expect=1e-50]} {Celegans: WBGene00020706, atg-9, Autophagy-related protein 9, [Score=183, Expect=7e-51]} {Smed: dd_Smed_v6_5369_0_1, dd_Smed_v6_5369_0_1, [Score=130, Expect=8e-33]} {RNA1509_18901} {RNA1310_7222.2} {RNA815_3686}

Mlig455_011684 {REF} {Length: 3465} {TRANSSPLICED} {Pfam: Autophagy protein ATG9 [PF04109.18, score=547.5]} {Human: ENSG00000198925, ATG9A, autophagy related 9A, [RH, Score=613, Expect=0.0]} {Mouse: ENSMUSG00000033124, Atg9a, autophagy related 9A, [RH, Score=610, Expect=0.0]} {Dmel: FBgn0034110, Atg9, Autophagy-related 9, [RH, Score=483, Expect=9e-159]} {Celegans: WBGene00020706, atg-9, Autophagy-related protein 9, [RH, Score=451, Expect=2e-145]} {Smed: dd_Smed_v6_5369_0_1, dd_Smed_v6_5369_0_1, [RH, Score=338, Expect=8e-105]} {RNA1509_18901} {RNA1310_7222.2} {RNA815_3686}

Mlig455_049907 {REF} {Length: 3081} {TRANSSPLICED} {Pfam: Autophagy protein ATG9 [PF04109.18, score=545.7]} {Human: ENSG00000198925, ATG9A, autophagy related 9A, [RH, Score=610, Expect=0.0]} {Mouse: ENSMUSG00000033124, Atg9a, autophagy related 9A, [RH, Score=610, Expect=0.0]} {Dmel: FBgn0034110, Atg9, Autophagy-related 9, [RH, Score=481, Expect=4e-158]} {Celegans: WBGene00020706, atg-9, Autophagy-related protein 9, [RH, Score=452, Expect=7e-146]} {Smed: dd_Smed_v6_5369_0_1, dd_Smed_v6_5369_0_1, [RH, Score=343, Expect=1e-106]} {RNA1509_18901, RNA1509_19560} {RNA1310_7222.2, RNA1509_18901, RNA1509_19560} {RNA1509_18901, RNA1509_19560, RNA815_3686}
15. MligTC455_34534 168 3.5 Mlig455_049250

Neo: -

Age: -

 LITAF 0.95 - - - - - 0.950 Mlig455_049250 {REF} {Length: 1099} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=78.4]; SprT-like zinc ribbon domain [PF17283.4, score=19.2]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=75.1, Expect=8e-18]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=79.0, Expect=2e-19]} {Smed: dd_Smed_v6_26606_0_1, dd_Smed_v6_26606_0_1, [Score=74.3, Expect=9e-19]} {RNA1509_59268} {RNA1310_31303} {RNA815_15626.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA