M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_06891

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_06891 313 6.52 Mlig455_061730

Neo: -

Age: Down-Down-Up

 CBFA2T3 Mlig455_061730 {REF} {Length: 2351} {Pfam: MYND finger [PF01753.20, score=33.0]} {Human: ENSG00000129993, CBFA2T3, CBFA2/RUNX1 translocation partner 3, [Score=114, Expect=4e-27]; ENSG00000079102, RUNX1T1, RUNX1 translocation partner 1, [Score=114, Expect=6e-27]; ENSG00000078699, CBFA2T2, CBFA2/RUNX1 translocation partner 2, [Score=110, Expect=1e-25]} {Mouse: ENSMUSG00000006586, Runx1t1, RUNX1 translocation partner 1, [Score=114, Expect=4e-27]; ENSMUSG00000006362, Cbfa2t3, CBFA2/RUNX1 translocation partner 3, [Score=112, Expect=9e-27]; ENSMUSG00000038533, Cbfa2t2, CBFA2/RUNX1 translocation partner 2, [Score=110, Expect=9e-26]} {Dmel: FBgn0005636, nvy, nervy, [Score=93.6, Expect=2e-20]} {Smed: dd_Smed_v6_11134_0_4, dd_Smed_v6_11134_0_4, [Score=82.0, Expect=8e-17]} {RNA1509_26428, RNA1509_43995} {RNA1310_17064, RNA1509_26428, RNA1509_43995} {RNA1509_26428, RNA1509_43995, RNA815_13919}

Cumulative graph for MligTC455_06891

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.31 2.703 0.13437 0.73545
RegionR2 3.155 2.703 0.00377 0.05340
RegionR3 2.358 2.703 0.01323 0.18293
RegionR4 0.291 2.703 0.74847 1.00000
RegionR5 -0.099 2.703 0.89084 1.00000
RegionR6 -0.598 2.703 0.96818 1.00000
RegionR7 1.492 2.703 0.23738 0.86138
RegionR8 -0.289 2.703 0.93440 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.341 2.703 0.05947 0.72608
RegenerationR2 -1.154 2.703 0.19139 0.63497
RegenerationR3 0.248 2.703 0.81418 0.98603
RegenerationR4 0.384 2.703 0.70502 0.95542
RegenerationR5 -0.148 2.703 0.89128 1.00000
RegenerationR6 0.64 2.703 0.59386 0.86578
RegenerationBL 2.799 2.703 0.00395 0.05621
RegenerationTP -0.546 2.703 0.70176 1.00000


Genes with expression patterns similar to MligTC455_06891

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_06891 313 6.52 Mlig455_061730

Neo: -

Age: Down-Down-Up

 CBFA2T3 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_061730 {REF} {Length: 2351} {Pfam: MYND finger [PF01753.20, score=33.0]} {Human: ENSG00000129993, CBFA2T3, CBFA2/RUNX1 translocation partner 3, [Score=114, Expect=4e-27]; ENSG00000079102, RUNX1T1, RUNX1 translocation partner 1, [Score=114, Expect=6e-27]; ENSG00000078699, CBFA2T2, CBFA2/RUNX1 translocation partner 2, [Score=110, Expect=1e-25]} {Mouse: ENSMUSG00000006586, Runx1t1, RUNX1 translocation partner 1, [Score=114, Expect=4e-27]; ENSMUSG00000006362, Cbfa2t3, CBFA2/RUNX1 translocation partner 3, [Score=112, Expect=9e-27]; ENSMUSG00000038533, Cbfa2t2, CBFA2/RUNX1 translocation partner 2, [Score=110, Expect=9e-26]} {Dmel: FBgn0005636, nvy, nervy, [Score=93.6, Expect=2e-20]} {Smed: dd_Smed_v6_11134_0_4, dd_Smed_v6_11134_0_4, [Score=82.0, Expect=8e-17]} {RNA1509_26428, RNA1509_43995} {RNA1310_17064, RNA1509_26428, RNA1509_43995} {RNA1509_26428, RNA1509_43995, RNA815_13919}
2. MligTC455_51207 1231 25.65 Mlig455_019925, Mlig455_047946

Neo: -

Age: -

 MCTP1 1.785 0.805 - - 0.980 - -

Mlig455_019925 {REF} {Length: 6036} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=305.3]} {Human: ENSG00000175471, MCTP1, multiple C2 and transmembrane domain containing 1, [Score=117, Expect=6e-26]} {Mouse: ENSMUSG00000032776, Mctp2, multiple C2 domains, transmembrane 2, [Score=114, Expect=4e-25]; ENSMUSG00000021596, Mctp1, multiple C2 domains, transmembrane 1, [Score=111, Expect=3e-24]} {Dmel: FBgn0034389, Mctp, Multiple C2 domain and transmembrane region protein, [Score=78.2, Expect=4e-14]} {Celegans: WBGene00004922, snt-2, Synaptotagmin 2, [Score=64.7, Expect=2e-10]} {Smed: dd_Smed_v6_13224_0_1, dd_Smed_v6_13224_0_1, [RH, Score=158, Expect=4e-39]} {RNA1509_4129} {RNA1310_1165.1} {RNA815_1160}

Mlig455_047946 {REF} {Length: 6306} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=305.4]} {Human: ENSG00000175471, MCTP1, multiple C2 and transmembrane domain containing 1, [Score=116, Expect=1e-25]} {Mouse: ENSMUSG00000021596, Mctp1, multiple C2 domains, transmembrane 1, [Score=111, Expect=4e-24]; ENSMUSG00000032776, Mctp2, multiple C2 domains, transmembrane 2, [Score=109, Expect=2e-23]} {Dmel: FBgn0039900, Syt7, Synaptotagmin 7, [Score=70.9, Expect=2e-12]} {Celegans: WBGene00004923, snt-3, SyNapTotagmin, [Score=68.2, Expect=7e-12]} {Smed: dd_Smed_v6_13224_0_1, dd_Smed_v6_13224_0_1, [RH, Score=158, Expect=4e-39]} {RNA1509_4129} {RNA1310_1165.1} {RNA815_1160}
3. MligTC455_30069 780 16.25 Mlig455_069584

Neo: -

Age: Up-Down-Up

 1.763 - - - 0.953 0.810 - Mlig455_069584 {REF} {Length: 4747} {TRANSSPLICED} {RNA1509_32679, RNA1509_34888, RNA1509_45586} {RNA1310_14141.1, RNA1509_32679, RNA1509_34888, RNA1509_45586} {RNA1509_32679, RNA1509_34888, RNA1509_45586, RNA815_19001}
4. MligTC455_14951 478 9.95 Mlig455_032947

Neo: -

Age: -

 0.972 - - - 0.972 - - Mlig455_032947 {REF} {Length: 1296} {Pfam: PTN/MK heparin-binding protein family, C-terminal domain [PF01091.20, score=25.6]; PTN/MK heparin-binding protein family, N-terminal domain [PF05196.15, score=24.8]; Spondin-like TSP1 domain [PF19028.2, score=20.3]} {RNA1509_34845} {RNA1310_26331.1, RNA1509_34845} {RNA1509_34845, RNA815_23523}
5. MligTC455_35755 919 19.14 Mlig455_068026

Neo: -

Age: logFC(26M/2M)=-0.205

Region-enriched R7: 1.992/0.01201

 0.964 - - - 0.964 - - Mlig455_068026 {REF} {Length: 7037} {RNA1509_16355} {RNA1310_6351.1, RNA1509_16355} {RNA1509_16355, RNA815_4874}
6. MligTC455_44425 460 9.58 Mlig455_041704

Neo: -

Age: -

 IPO11 0.96 - - - 0.960 - - Mlig455_041704 {REF} {Length: 4130} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=40.5]} {Human: ENSG00000086200, IPO11, importin 11, [RH, Score=132, Expect=1e-30]} {Mouse: ENSMUSG00000042590, Ipo11, importin 11, [RH, Score=132, Expect=5e-31]} {Dmel: FBgn0284254, Impbeta11, Importin beta11, [RH, Score=96.7, Expect=5e-20]} {RNA1509_12338} {RNA1310_4949.1} {RNA815_1982}
7. MligTC455_16807 627 13.07 Mlig455_064067, Mlig455_064997

Neo: -

Age: -

 TRAF7 0.958 - - - 0.958 - -

Mlig455_064067 {REF} {Length: 2484} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=50.3]; zinc finger of C3HC4-type, RING [PF15227.8, score=26.3]} {Human: ENSG00000131653, TRAF7, TNF receptor associated factor 7, [Score=224, Expect=1e-64]} {Mouse: ENSMUSG00000052752, Traf7, TNF receptor-associated factor 7, [Score=222, Expect=2e-64]} {Dmel: FBgn0041171, ago, archipelago, [Score=60.8, Expect=2e-09]} {Celegans: WBGene00003047, lis-1, Lissencephaly-1 homolog, [Score=47.8, Expect=1e-05]} {Smed: dd_Smed_v6_7882_0_1, dd_Smed_v6_7882_0_1, [Score=164, Expect=3e-44]} {RNA1509_39146} {RNA1310_8298.2} {RNA815_8655}

Mlig455_064997 {REF} {Length: 2598} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=81.4]; zinc finger of C3HC4-type, RING [PF15227.8, score=26.1]} {Human: ENSG00000131653, TRAF7, TNF receptor associated factor 7, [RH, Score=288, Expect=1e-87]} {Mouse: ENSMUSG00000052752, Traf7, TNF receptor-associated factor 7, [RH, Score=287, Expect=4e-88]} {Dmel: FBgn0041171, ago, archipelago, [Score=95.1, Expect=6e-20]} {Celegans: WBGene00003009, lin-23, F-box/WD repeat-containing protein lin-23, [Score=83.2, Expect=2e-16]} {Smed: dd_Smed_v6_7882_0_1, dd_Smed_v6_7882_0_1, [RH, Score=228, Expect=5e-67]} {RNA1509_53263} {RNA1310_8298.2} {RNA815_12519}
8. MligTC455_35202 533 11.11 Mlig455_040988, Mlig455_056406

Neo: -

Age: -

 0.956 - - - 0.956 - -

Mlig455_040988 {REF} {Length: 11337} {RNA1509_43690, RNA1509_45342, RNA1509_58158} {RNA1310_8601.1, RNA1509_43690, RNA1509_45342, RNA1509_58158} {RNA1509_43690, RNA1509_45342, RNA1509_58158, RNA815_11562.1}

Mlig455_056406 {REF} {Length: 961} {NoTransDecoderORF} {RNA1509_45342} {RNA1310_23229} {RNA815_17325}
9. MligTC455_20269 75 1.57 Mlig455_032480

Neo: -

Age: -

 CACNG5 0.95 0.950 - - - - - Mlig455_032480 {REF} {Length: 2885} {Pfam: PMP-22/EMP/MP20/Claudin tight junction [PF13903.8, score=68.8]; PMP-22/EMP/MP20/Claudin family [PF00822.22, score=50.3]} {Human: ENSG00000075429, CACNG5, calcium voltage-gated channel auxiliary subunit gamma 5, [RH, Score=105, Expect=7e-25]} {Mouse: ENSMUSG00000040373, Cacng5, calcium channel, voltage-dependent, gamma subunit 5, [RH, Score=104, Expect=8e-25]} {Dmel: FBgn0064123, stg1, stargazin-like protein, [RH, Score=68.6, Expect=4e-12]} {Smed: dd_Smed_v6_20066_0_1, dd_Smed_v6_20066_0_1, [RH, Score=217, Expect=2e-64]} {RNA1310_28766} {RNA815_15582}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA