TomoSeq data search

Data search

Results for MligTC455_06911

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_06911

1019

21.22

Mlig455_017250

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.423

LDB3

Mlig455_017250 {REF} {Length: 1165} {Pfam: PDZ domain [PF00595.26, score=47.4]} {Human: ENSG00000122367, LDB3, LIM domain binding 3, [Score=49.7, Expect=9e-07]; ENSG00000120913, PDLIM2, PDZ and LIM domain 2, [Score=48.5, Expect=3e-06]; ENSG00000095397, WHRN, whirlin, [Score=47.8, Expect=7e-06]} {Mouse: ENSMUSG00000039376, Synpo2l, synaptopodin 2-like, [Score=53.9, Expect=5e-08]; ENSMUSG00000022090, Pdlim2, PDZ and LIM domain 2, [Score=52.0, Expect=7e-08]} {Dmel: FBgn0265991, Zasp52, Z band alternatively spliced PDZ-motif protein 52, [Score=63.5, Expect=2e-11]} {Smed: dd_Smed_v6_2888_0_1, dd_Smed_v6_2888_0_1, [RH, Score=232, Expect=6e-78]} {RNA1509_7357} {RNA1310_30396.1, RNA1509_7357} {RNA1509_7357, RNA815_14081}

Cumulative graph for MligTC455_06911

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.547	4.623	0.02593	0.42412
RegionR2	0.133	4.623	0.73856	1.00000
RegionR3	0.286	4.623	0.40114	0.92940
RegionR4	0.24	4.623	0.56829	0.88673
RegionR5	-0.375	4.623	0.32092	0.66290
RegionR6	0.733	4.623	0.02858	0.31096
RegionR7	0.746	4.623	0.06003	0.46958
RegionR8	0.784	4.623	0.09581	0.58431

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.105	4.623	0.22697	0.95817
RegenerationR2	-0.785	4.623	0.01944	0.22880
RegenerationR3	-0.529	4.623	0.14628	0.57327
RegenerationR4	-0.262	4.623	0.49485	0.86706
RegenerationR5	-0.19	4.623	0.61125	0.91471
RegenerationR6	-0.853	4.623	0.01996	0.17460
RegenerationBL	-0.794	4.623	0.04500	0.24274
RegenerationTP	-0.509	4.623	0.21601	0.65907

Genes with expression patterns similar to MligTC455_06911

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_06911	1019	21.22	Mlig455_017250	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.423	LDB3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_017250 {REF} {Length: 1165} {Pfam: PDZ domain [PF00595.26, score=47.4]} {Human: ENSG00000122367, LDB3, LIM domain binding 3, [Score=49.7, Expect=9e-07]; ENSG00000120913, PDLIM2, PDZ and LIM domain 2, [Score=48.5, Expect=3e-06]; ENSG00000095397, WHRN, whirlin, [Score=47.8, Expect=7e-06]} {Mouse: ENSMUSG00000039376, Synpo2l, synaptopodin 2-like, [Score=53.9, Expect=5e-08]; ENSMUSG00000022090, Pdlim2, PDZ and LIM domain 2, [Score=52.0, Expect=7e-08]} {Dmel: FBgn0265991, Zasp52, Z band alternatively spliced PDZ-motif protein 52, [Score=63.5, Expect=2e-11]} {Smed: dd_Smed_v6_2888_0_1, dd_Smed_v6_2888_0_1, [RH, Score=232, Expect=6e-78]} {RNA1509_7357} {RNA1310_30396.1, RNA1509_7357} {RNA1509_7357, RNA815_14081}
2.	MligTC455_06912	729	15.18	Mlig455_017328	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.402	RCN1	5.27	0.890	0.835	0.804	0.908	0.875	0.958	Mlig455_017328 {REF} {Length: 2622} {Pfam: EF-hand domain pair [PF13499.8, score=55.0]; EF hand [PF00036.34, score=54.7]; PDZ domain [PF00595.26, score=44.5]; EF-hand domain [PF13405.8, score=41.2]; EF hand [PF13202.8, score=39.5]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=28.7]; EF-hand domain pair [PF13833.8, score=18.3]} {Human: ENSG00000049449, RCN1, reticulocalbin 1, [Score=178, Expect=1e-49]; ENSG00000142552, RCN3, reticulocalbin 3, [Score=170, Expect=6e-47]} {Mouse: ENSMUSG00000005973, Rcn1, reticulocalbin 1, [Score=175, Expect=8e-49]; ENSMUSG00000019539, Rcn3, reticulocalbin 3, EF-hand calcium binding domain, [Score=171, Expect=2e-47]} {Dmel: FBgn0025682, scf, supercoiling factor, [Score=178, Expect=4e-50]} {Celegans: WBGene00019760, calu-1, CALUmenin (Calcium-binding protein) homolog; Calumenin-like protein, [Score=168, Expect=9e-47]} {Smed: dd_Smed_v6_2888_0_1, dd_Smed_v6_2888_0_1, [RH, Score=224, Expect=5e-69]} {RNA1509_7357} {RNA1310_30396.1} {RNA815_14081}
3.	MligTC455_41749	637	13.26	Mlig455_025663, Mlig455_058648	Neo: - Age: -		1.705	-	-	-	-	0.738	0.967	Mlig455_025663 {REF} {Length: 466} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_31425} {RNA1310_76452, RNA1509_31425} {RNA1509_31425, RNA815_42407} Mlig455_058648 {REF} {Length: 441} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_31425} {RNA1310_76452} {RNA815_42407}
4.	MligTC455_29571	479	9.99	Mlig455_040381	Neo: - Age: - Region-enriched R4: 1.349/0.03232	TRAF3	0.954	-	-	-	-	-	0.954	Mlig455_040381 {REF} {Length: 4738} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=31.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.9]; zf-RING of BARD1-type protein [PF14835.8, score=19.2]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=300, Expect=2e-94]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [RH, Score=298, Expect=6e-94]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [RH, Score=292, Expect=1e-91]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [RH, Score=292, Expect=1e-91]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=122, Expect=1e-29]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=101, Expect=7e-23]} {Smed: dd_Smed_v6_4148_0_1, dd_Smed_v6_4148_0_1, [RH, Score=194, Expect=4e-56]} {RNA1509_2193, RNA1509_24774, RNA1509_35341, RNA1509_54605} {RNA1310_5587.1, RNA1509_24774, RNA1509_35341, RNA1509_54605} {RNA1509_24774, RNA1509_35341, RNA1509_54605, RNA815_4083.2}
5.	MligTC455_42167	2422	50.46	Mlig455_046550	Neo: - Age: Down-Up-Up Region-enriched R2: 1.616/0.02037		0.95	-	-	-	-	-	0.950	Mlig455_046550 {REF} {Length: 628} {RNA1509_22247} {RNA1310_6211} {RNA815_2612.1}

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