M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07079

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07079 15 0.32 Mlig455_014010

Neo: -

Age: -

 Mlig455_014010 {REF} {Length: 2657} {NoTransDecoderORF} {RNA1509_3393} {RNA1310_70009} {RNA815_26647}

Cumulative graph for MligTC455_07079

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.023 0.775 0.99965 1.00000
RegionR2 -1.539 0.775 0.99976 1.00000
RegionR3 0.22 0.775 0.99982 1.00000
RegionR4 1.065 0.775 0.99983 1.00000
RegionR5 0.592 0.775 0.99988 1.00000
RegionR6 -0.621 0.775 0.99993 1.00000
RegionR7 -0.511 0.775 0.99997 1.00000
RegionR8 0.77 0.775 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.474 0.775 0.99991 1.00000
RegenerationR2 2.669 0.775 0.30071 0.74239
RegenerationR3 1.761 0.775 0.18437 0.62052
RegenerationR4 1.135 0.775 0.32930 0.76420
RegenerationR5 -0.361 0.775 0.59781 0.90924
RegenerationR6 2.131 0.775 0.25523 0.60537
RegenerationBL -1.643 0.775 0.99996 1.00000
RegenerationTP -1.139 0.775 0.99993 1.00000


Genes with expression patterns similar to MligTC455_07079

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07079 15 0.32 Mlig455_014010

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_014010 {REF} {Length: 2657} {NoTransDecoderORF} {RNA1509_3393} {RNA1310_70009} {RNA815_26647}
2. MligTC455_49799 59 1.24 Mlig455_011473, Mlig455_011560

Neo: -

Age: Up-Down-Up

 SCNN1G 0.98 - - - - 0.980 -

Mlig455_011473 {REF} {Length: 3328} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=109.0]; WSC domain [PF01822.21, score=37.6]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=53.9, Expect=1e-06]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=52.4, Expect=2e-06]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=51.6, Expect=2e-06]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=53.1, Expect=6e-07]} {RNA1509_37881} {RNA1310_13882.2} {RNA815_32243}

Mlig455_011560 {REF} {Length: 3881} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=150.9]; WSC domain [PF01822.21, score=36.9]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=53.9, Expect=2e-06]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=52.4, Expect=3e-06]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=52.0, Expect=2e-06]} {Smed: dd_Smed_v6_31771_0_1, dd_Smed_v6_31771_0_1, [Score=54.7, Expect=2e-07]} {RNA1509_37881} {RNA1310_13882.2} {RNA815_32243}
3. MligTC455_39799 175 3.65 Mlig455_061189

Neo: -

Age: -

 LPGAT1 0.976 - - - 0.976 - - Mlig455_061189 {REF} {Length: 3703} {TRANSSPLICED} {Pfam: Acyltransferase [PF01553.23, score=36.8]; Acyltransferase C-terminus [PF16076.7, score=33.5]} {Human: ENSG00000123684, LPGAT1, lysophosphatidylglycerol acyltransferase 1, [RH, Score=181, Expect=4e-53]} {Mouse: ENSMUSG00000026623, Lpgat1, lysophosphatidylglycerol acyltransferase 1, [RH, Score=187, Expect=6e-56]} {Celegans: WBGene00019465, acl-14, ACyLtransferase-like, [RH, Score=194, Expect=2e-58]} {Smed: dd_Smed_v6_7263_0_1, dd_Smed_v6_7263_0_1, [RH, Score=165, Expect=1e-47]} {RNA1509_42870} {RNA1310_24690, RNA1509_42870} {RNA1509_42870, RNA815_10640}
4. MligTC455_01453 12 0.25 Mlig455_042715

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_042715 {REF} {Length: 3215} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=126.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1}
5. MligTC455_48276 69 1.44 Mlig455_015378

Neo: -

Age: -

 FCN2 0.972 - - - - 0.972 - Mlig455_015378 {REF} {Length: 1596} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=161.5]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=139, Expect=6e-39]; ENSG00000085265, FCN1, ficolin 1, [Score=136, Expect=2e-37]; ENSG00000101280, ANGPT4, angiopoietin 4, [Score=134, Expect=2e-35]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=127, Expect=3e-33]; ENSMUSG00000042436, Mfap4, microfibrillar-associated protein 4, [Score=126, Expect=1e-34]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=126, Expect=5e-34]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=125, Expect=2e-32]; ENSMUSG00000026938, Fcna, ficolin A, [Score=125, Expect=2e-33]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=123, Expect=1e-32]; ENSMUSG00000033327, Tnxb, tenascin XB, [Score=122, Expect=2e-30]; ENSMUSG00000026841, Fibcd1, fibrinogen C domain containing 1, [Score=121, Expect=4e-31]; ENSMUSG00000031465, Angpt2, angiopoietin 2, [Score=121, Expect=5e-31]} {Dmel: FBgn0050281, CG30281, [Score=119, Expect=1e-31]} {Celegans: WBGene00020516, T15B7.1, [Score=58.5, Expect=1e-09]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=118, Expect=6e-30]} {RNA1310_26951} {RNA815_34252}
6. MligTC455_51914 307 6.4 Mlig455_007656, Mlig455_020889, Mlig455_020967

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_007656 {REF} {Length: 1975} {RNA1509_33227, RNA1509_54804} {RNA1310_17319, RNA1509_33227, RNA1509_54804} {RNA1509_33227, RNA1509_54804, RNA815_9611.1}

Mlig455_020889 {REF} {Length: 1960} {RNA1509_33227} {RNA1310_17319} {RNA815_9611.1}

Mlig455_020967 {REF} {Length: 2143} {RNA1509_33227} {RNA1310_17319} {RNA815_9611.1}
7. MligTC455_30779 140 2.92 Mlig455_061630

Neo: -

Age: -

 LRIG2 0.952 - - - - 0.952 - Mlig455_061630 {REF} {Length: 6435} {Pfam: Leucine rich repeat [PF13855.8, score=97.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=39.2]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=37.9]} {Human: ENSG00000198799, LRIG2, leucine rich repeats and immunoglobulin like domains 2, [Score=57.4, Expect=2e-07]; ENSG00000255690, TRIL, TLR4 interactor with leucine rich repeats, [Score=55.1, Expect=9e-07]} {Mouse: ENSMUSG00000043496, Tril, TLR4 interactor with leucine-rich repeats, [Score=59.7, Expect=3e-08]} {Dmel: FBgn0004364, 18w, 18 wheeler, [Score=77.0, Expect=1e-13]} {Celegans: WBGene00006593, tol-1, TOLl (Drosophila) family, [Score=75.9, Expect=2e-13]} {RNA1509_37294} {RNA1310_1523.2} {RNA815_1519}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA