M. lignano Tomo-Seq
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Results for MligTC455_07217

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07217 13 0.27 Mlig455_028239

Neo: -

Age: -

 Mlig455_028239 {REF} {Length: 548} {NoTransDecoderORF} {RNA1509_49996} {RNA1310_9034} {RNA815_7354}

Cumulative graph for MligTC455_07217

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.733 0.691 0.99990 1.00000
RegionR2 0.82 0.691 0.99981 1.00000
RegionR3 -1.167 0.691 0.99976 1.00000
RegionR4 -0.389 0.691 0.99962 1.00000
RegionR5 -1.773 0.691 0.99976 1.00000
RegionR6 -1.045 0.691 0.99976 1.00000
RegionR7 0.943 0.691 0.99993 1.00000
RegionR8 0.878 0.691 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.715 0.691 0.99988 1.00000
RegenerationR2 2.523 0.691 0.02369 0.25266
RegenerationR3 3.83 0.691 0.22643 0.66153
RegenerationR4 2.022 0.691 0.38678 0.80536
RegenerationR5 1.65 0.691 0.27184 0.70322
RegenerationR6 3.157 0.691 0.18670 0.52317
RegenerationBL 2.642 0.691 0.09096 0.35376
RegenerationTP 2.563 0.691 0.51460 0.91095


Genes with expression patterns similar to MligTC455_07217

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07217 13 0.27 Mlig455_028239

Neo: -

Age: -

 2 - - - - 1.000 1.000 Mlig455_028239 {REF} {Length: 548} {NoTransDecoderORF} {RNA1509_49996} {RNA1310_9034} {RNA815_7354}
2. MligTC455_41378 178 3.71 Mlig455_030228, Mlig455_068007

Neo: -

Age: Down-Up-Down

 TET2 0.977 - - - - 0.977 -

Mlig455_030228 {REF} {Length: 3771} {Pfam: Oxygenase domain of the 2OGFeDO superfamily [PF12851.9, score=168.3]} {Human: ENSG00000168769, TET2, tet methylcytosine dioxygenase 2, [RH, Score=281, Expect=1e-79]} {Mouse: ENSMUSG00000034832, Tet3, tet methylcytosine dioxygenase 3, [Score=278, Expect=1e-78]; ENSMUSG00000040943, Tet2, tet methylcytosine dioxygenase 2, [Score=269, Expect=1e-75]} {Dmel: FBgn0263392, Tet, Ten-Eleven Translocation (TET) family protein, [Score=284, Expect=6e-81]} {RNA1310_10331} {RNA815_41425}

Mlig455_068007 {REF} {Length: 3865} {Pfam: Oxygenase domain of the 2OGFeDO superfamily [PF12851.9, score=170.1]} {Human: ENSG00000168769, TET2, tet methylcytosine dioxygenase 2, [RH, Score=285, Expect=3e-80]} {Mouse: ENSMUSG00000034832, Tet3, tet methylcytosine dioxygenase 3, [Score=281, Expect=3e-79]; ENSMUSG00000040943, Tet2, tet methylcytosine dioxygenase 2, [Score=273, Expect=2e-76]} {Dmel: FBgn0263392, Tet, Ten-Eleven Translocation (TET) family protein, [RH, Score=287, Expect=2e-81]} {RNA1310_10331} {RNA815_43742}
3. MligTC455_10850 44 0.91 Mlig455_015903

Neo: -

Age: -

 SLC47A1 0.973 - - - - 0.973 - Mlig455_015903 {REF} {Length: 3108} {Pfam: MatE [PF01554.20, score=163.9]} {Human: ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=296, Expect=2e-92]} {Mouse: ENSMUSG00000010122, Slc47a1, solute carrier family 47, member 1, [RH, Score=319, Expect=3e-101]; ENSMUSG00000069855, Slc47a2, solute carrier family 47, member 2, [RH, Score=311, Expect=2e-98]} {Smed: dd_Smed_v6_11376_0_1, dd_Smed_v6_11376_0_1, [Score=392, Expect=6e-130]} {RNA1509_41969} {RNA1310_11520} {RNA815_9412}
4. MligTC455_40805 59 1.24 Mlig455_033653

Neo: -

Age: Up-Down-Down

 TIAM2 0.963 - - - - 0.963 - Mlig455_033653 {REF} {Length: 6520} {Pfam: RhoGEF domain [PF00621.22, score=116.4]; T-lymphoma invasion and metastasis CC-Ex domain [PF18385.3, score=61.7]; PH domain [PF00169.31, score=57.4]; Pleckstrin homology domain [PF15410.8, score=35.5]; Raf-like Ras-binding domain [PF02196.17, score=33.8]; PDZ domain [PF17820.3, score=30.2]; PDZ domain [PF00595.26, score=30.0]; PDZ domain [PF13180.8, score=19.8]} {Human: ENSG00000146426, TIAM2, T cell lymphoma invasion and metastasis 2, [RH, Score=303, Expect=2e-82]; ENSG00000156299, TIAM1, T cell lymphoma invasion and metastasis 1, [RH, Score=299, Expect=2e-81]} {Mouse: ENSMUSG00000023800, Tiam2, T cell lymphoma invasion and metastasis 2, [RH, Score=302, Expect=2e-82]; ENSMUSG00000002489, Tiam1, T cell lymphoma invasion and metastasis 1, [RH, Score=296, Expect=1e-80]} {Dmel: FBgn0085447, sif, still life, [RH, Score=410, Expect=2e-115]} {Celegans: WBGene00015704, tiam-1, TIAM (Mammalian Tumor Invasion And Metastasis factor) homolog, [RH, Score=102, Expect=2e-21]} {Smed: dd_Smed_v6_4803_0_1, dd_Smed_v6_4803_0_1, [Score=70.9, Expect=6e-12]} {RNA1509_45743} {RNA1310_5656.1} {RNA815_9341}

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