M. lignano Tomo-Seq
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Results for MligTC455_07294

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07294 55 1.14 Mlig455_051127

Neo: -

Age: -

 Mlig455_051127 {REF} {Length: 1900} {RNA1310_35180} {RNA815_25256}

Cumulative graph for MligTC455_07294

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.64 1.498 0.99971 1.00000
RegionR2 2.629 1.498 0.11265 0.41497
RegionR3 3.104 1.498 0.01292 0.18004
RegionR4 0.676 1.498 0.57328 0.89123
RegionR5 0.675 1.498 0.51456 0.87761
RegionR6 0.851 1.498 0.50780 1.00000
RegionR7 -3.712 1.498 0.99972 1.00000
RegionR8 1.418 1.498 0.40001 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.933 1.498 0.99992 1.00000
RegenerationR2 0.396 1.498 0.71676 0.96229
RegenerationR3 0.734 1.498 0.53522 0.87457
RegenerationR4 0.903 1.498 0.52149 0.87971
RegenerationR5 0.993 1.498 0.48908 0.85174
RegenerationR6 2.284 1.498 0.10923 0.40874
RegenerationBL -1.387 1.498 0.99984 1.00000
RegenerationTP 2.825 1.498 0.20779 0.64960


Genes with expression patterns similar to MligTC455_07294

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07294 55 1.14 Mlig455_051127

Neo: -

Age: -

 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_051127 {REF} {Length: 1900} {RNA1310_35180} {RNA815_25256}
2. MligTC455_10695 139 2.89 Mlig455_002245

Neo: -

Age: -

 1.756 - 0.798 - - 0.958 - Mlig455_002245 {REF} {Length: 1939} {NoTransDecoderORF} {RNA1310_45257} {RNA815_55869}
3. MligTC455_30739 246 5.13 Mlig455_056815

Neo: -

Age: Up-Down-Down

 SLC9A9 0.98 - - - - 0.980 - Mlig455_056815 {REF} {Length: 2629} {Pfam: Sodium/hydrogen exchanger family [PF00999.23, score=37.5]} {Human: ENSG00000181804, SLC9A9, solute carrier family 9 member A9, [Score=95.9, Expect=2e-23]} {Mouse: ENSMUSG00000031129, Slc9a9, solute carrier family 9 (sodium/hydrogen exchanger), member 9, [Score=95.5, Expect=2e-23]} {Dmel: FBgn0028703, Nhe3, Na[+]/H[+] hydrogen exchanger 3, [Score=92.0, Expect=3e-22]} {Celegans: WBGene00003733, nhx-5, Sodium/hydrogen exchanger, [Score=77.0, Expect=3e-17]} {Smed: dd_Smed_v6_5461_0_1, dd_Smed_v6_5461_0_1, [Score=100, Expect=2e-25]} {RNA1509_50997} {RNA1310_6937.1} {RNA815_21083}
4. MligTC455_49571 30 0.62 Mlig455_004993

Neo: -

Age: logFC(26M/2M)=0.531

 DDX4 0.96 - - - - 0.960 - Mlig455_004993 {REF} {Length: 3458} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=148.8]; Zinc knuckle [PF00098.25, score=130.6]; Helicase conserved C-terminal domain [PF00271.33, score=95.5]; GAG-polyprotein viral zinc-finger [PF14787.8, score=31.1]; Zinc knuckle [PF13917.8, score=28.5]; Zinc knuckle [PF13696.8, score=28.2]; Type III restriction enzyme, res subunit [PF04851.17, score=27.4]} {Human: ENSG00000152670, DDX4, DEAD-box helicase 4, [Score=335, Expect=5e-104]} {Mouse: ENSMUSG00000021758, Ddx4, DEAD (Asp-Glu-Ala-Asp) box polypeptide 4, [Score=337, Expect=9e-105]} {Dmel: FBgn0283442, vas, vasa, [Score=329, Expect=2e-102]} {Celegans: WBGene00001598, glh-1, ATP-dependent RNA helicase glh-1, [Score=333, Expect=6e-103]} {Smed: dd_Smed_v6_1985_0_2, dd_Smed_v6_1985_0_2, [Score=328, Expect=4e-100]} {RNA1509_27748, RNA1509_54711} {RNA1310_12209, RNA1509_54711} {RNA1509_54711, RNA815_1800.1}
5. MligTC455_40140 389 8.1 Mlig455_051792

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.763

Region-enriched R3: 2.986/0.00398

 0.95 - - - - - 0.950 Mlig455_051792 {REF} {Length: 1593} {Pfam: Glycosyl hydrolases family 16 [PF00722.23, score=63.3]; PAN domain [PF14295.8, score=41.7]; PAN domain [PF00024.28, score=26.2]} {Dmel: FBgn0040322, GNBP2, Gram-negative bacteria binding protein 2, [RH, Score=116, Expect=5e-28]} {RNA1509_3048} {RNA1310_9523} {RNA815_8966}

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