M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07295

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07295 28 0.58 Mlig455_044398

Neo: -

Age: -

 Mlig455_044398 {REF} {Length: 567} {NoTransDecoderORF} {RNA1509_58151} {RNA1310_14407.1} {RNA815_35844}

Cumulative graph for MligTC455_07295

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.254 1.081 0.99988 1.00000
RegionR2 0.424 1.081 0.74322 1.00000
RegionR3 -0.879 1.081 1.00000 1.00000
RegionR4 1.807 1.081 0.25910 0.56114
RegionR5 1.322 1.081 0.33968 0.68657
RegionR6 -1.2 1.081 0.99983 1.00000
RegionR7 -1.09 1.081 1.00000 1.00000
RegionR8 -0.131 1.081 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.716 1.081 1.00000 1.00000
RegenerationR2 2.108 1.081 0.43508 0.83736
RegenerationR3 2.861 1.081 0.34884 0.76992
RegenerationR4 0.192 1.081 0.91131 1.00000
RegenerationR5 0.834 1.081 0.73394 0.96530
RegenerationR6 2.326 1.081 0.41355 0.74659
RegenerationBL -1.473 1.081 0.99992 1.00000
RegenerationTP 3.021 1.081 0.45010 0.86736


Genes with expression patterns similar to MligTC455_07295

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07295 28 0.58 Mlig455_044398

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_044398 {REF} {Length: 567} {NoTransDecoderORF} {RNA1509_58151} {RNA1310_14407.1} {RNA815_35844}
2. MligTC455_27077 57 1.19 Mlig455_021365, Mlig455_021596

Neo: -

Age: -

 2.468 - - - 0.754 0.957 0.757

Mlig455_021365 {REF} {Length: 1066} {RNA1509_59553} {RNA1310_99471} {RNA815_41194.1}

Mlig455_021596 {REF} {Length: 1049} {RNA1509_59553} {RNA1310_99471} {RNA815_41194.1}
3. MligTC455_33392 79 1.65 Mlig455_020352

Neo: -

Age: -

 0.98 - - - - - 0.980 Mlig455_020352 {REF} {Length: 2840} {TRANSSPLICED} {RNA1509_27913, RNA1509_43079} {RNA1310_6536, RNA1509_27913, RNA1509_43079} {RNA1509_27913, RNA1509_43079, RNA815_19665}
4. MligTC455_05792 27 0.57 Mlig455_064707

Neo: -

Age: logFC(26M/2M)=-0.538

 IRX6 0.976 - - - 0.976 - - Mlig455_064707 {REF} {Length: 2122} {Pfam: Homeobox KN domain [PF05920.13, score=54.5]; Homeodomain [PF00046.31, score=29.8]} {Human: ENSG00000159387, IRX6, iroquois homeobox 6, [RH, Score=149, Expect=2e-39]} {Mouse: ENSMUSG00000031738, Irx6, Iroquois homeobox 6, [RH, Score=142, Expect=5e-37]; ENSMUSG00000031737, Irx5, Iroquois homeobox 5, [RH, Score=141, Expect=2e-36]; ENSMUSG00000001504, Irx2, Iroquois homeobox 2, [RH, Score=139, Expect=6e-36]; ENSMUSG00000031734, Irx3, Iroquois related homeobox 3, [RH, Score=139, Expect=1e-35]; ENSMUSG00000060969, Irx1, Iroquois homeobox 1, [RH, Score=137, Expect=5e-35]} {Dmel: FBgn0014343, mirr, mirror, [RH, Score=150, Expect=3e-39]} {Celegans: WBGene00007984, irx-1, Putative iroquois-class homeodomain protein irx-1, [RH, Score=117, Expect=4e-29]} {Smed: dd_Smed_v6_18125_0_1, dd_Smed_v6_18125_0_1, [RH, Score=153, Expect=2e-41]} {RNA1310_13447.1} {RNA815_21567}
5. MligTC455_22499 17 0.35 Mlig455_002577

Neo: -

Age: -

 0.972 - - - - - 0.972 Mlig455_002577 {REF} {Length: 2927} {NoTransDecoderORF} {RNA1509_46209} {RNA1310_8821} {RNA815_20255}
6. MligTC455_09767 25 0.53 Mlig455_063789

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_063789 {REF} {Length: 621} {NoTransDecoderORF} {RNA1310_116014}
7. MligTC455_27523 243 5.05 Mlig455_054022

Neo: -

Age: logFC(26M/2M)=-0.561

 ABCG2 0.964 - - - - 0.964 - Mlig455_054022 {REF} {Length: 3097} {Pfam: ABC-2 type transporter [PF01061.26, score=96.6]; ABC transporter [PF00005.29, score=96.0]; ABC-2 type transporter [PF19055.2, score=48.9]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=25.0]} {Human: ENSG00000118777, ABCG2, ATP binding cassette subfamily G member 2 (Junior blood group), [Score=248, Expect=2e-72]} {Mouse: ENSMUSG00000029802, Abcg2, ATP binding cassette subfamily G member 2 (Junior blood group), [Score=249, Expect=4e-73]} {Dmel: FBgn0020445, E23, Early gene at 23, [RH, Score=389, Expect=3e-122]} {Celegans: WBGene00015479, wht-1, ABC transporter ATP-binding protein/permease wht-1, [Score=220, Expect=4e-63]} {Smed: dd_Smed_v6_4081_0_1, dd_Smed_v6_4081_0_1, [RH, Score=222, Expect=4e-63]} {RNA1509_19841, RNA1509_34893} {RNA1310_6299.1, RNA1509_19841, RNA1509_34893} {RNA1509_19841, RNA1509_34893, RNA815_1994.1}
8. MligTC455_30583 207 4.31 Mlig455_025297

Neo: -

Age: -

Region-enriched R7: 4.056/0.00000

 SLC44A5 0.962 - - - - 0.962 - Mlig455_025297 {REF} {Length: 5655} {Pfam: Plasma-membrane choline transporter [PF04515.14, score=356.8]} {Human: ENSG00000137968, SLC44A5, solute carrier family 44 member 5, [Score=494, Expect=9e-165]; ENSG00000229077, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=3e-161]; ENSG00000231479, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=2e-161]; ENSG00000232180, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=3e-161]; ENSG00000235336, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=3e-161]; ENSG00000206378, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=2e-161]; ENSG00000228263, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=2e-161]; ENSG00000204385, SLC44A4, solute carrier family 44 member 4, [Score=485, Expect=2e-161]; ENSG00000129353, SLC44A2, solute carrier family 44 member 2, [Score=483, Expect=2e-160]} {Mouse: ENSMUSG00000057193, Slc44a2, solute carrier family 44, member 2, [Score=524, Expect=8e-177]} {Dmel: FBgn0039637, Ctl2, Choline transporter-like 2, [Score=363, Expect=6e-114]} {Celegans: WBGene00018037, chtl-1, Choline transporter-like protein 1, [Score=418, Expect=1e-135]} {Smed: dd_Smed_v6_4192_0_2, dd_Smed_v6_4192_0_2, [Score=533, Expect=1e-180]} {RNA1509_53036} {RNA1310_4768.1, RNA1509_53036} {RNA1509_53036, RNA815_2572}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA