M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07632

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07632 9 0.20 Mlig455_058400

Neo: -

Age: -

 Mlig455_058400 {REF} {Length: 606} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_125886}

Cumulative graph for MligTC455_07632

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_07632

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07632 9 0.2 Mlig455_058400

Neo: -

Age: -

 2 - - 1.000 - - 1.000 Mlig455_058400 {REF} {Length: 606} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_125886}
2. MligTC455_08037 13 0.27 Mlig455_037418, Mlig455_037484

Neo: -

Age: -

 CHRNB2, HTR3E 0.978 - - 0.978 - - -

Mlig455_037418 {REF} {Length: 1268} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=102.4]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=75.2]} {Human: ENSG00000160716, CHRNB2, cholinergic receptor nicotinic beta 2 subunit, [Score=129, Expect=3e-32]; ENSG00000186038, HTR3E, 5-hydroxytryptamine receptor 3E, [Score=128, Expect=3e-32]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=127, Expect=2e-31]; ENSG00000178084, HTR3C, 5-hydroxytryptamine receptor 3C, [Score=126, Expect=2e-31]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=125, Expect=4e-31]; ENSG00000166736, HTR3A, 5-hydroxytryptamine receptor 3A, [Score=124, Expect=7e-31]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=123, Expect=3e-30]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=130, Expect=5e-33]; ENSMUSG00000027950, Chrnb2, cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal), [Score=127, Expect=6e-32]; ENSMUSG00000041189, Chrnb1, cholinergic receptor, nicotinic, beta polypeptide 1 (muscle), [Score=124, Expect=1e-30]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=137, Expect=3e-35]} {Celegans: WBGene00017580, lgc-4, Ligand-gated ion channel 4, [Score=142, Expect=1e-36]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=134, Expect=2e-34]} {RNA1509_53098} {RNA1310_100091} {RNA815_45198}

Mlig455_037484 {REF} {Length: 1840} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=99.8]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=75.2]} {Human: ENSG00000186038, HTR3E, 5-hydroxytryptamine receptor 3E, [Score=129, Expect=9e-33]; ENSG00000178084, HTR3C, 5-hydroxytryptamine receptor 3C, [Score=127, Expect=7e-32]; ENSG00000160716, CHRNB2, cholinergic receptor nicotinic beta 2 subunit, [Score=127, Expect=7e-32]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=127, Expect=1e-31]; ENSG00000166736, HTR3A, 5-hydroxytryptamine receptor 3A, [Score=125, Expect=4e-31]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=125, Expect=9e-31]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=130, Expect=4e-33]; ENSMUSG00000027950, Chrnb2, cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal), [Score=127, Expect=1e-31]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=135, Expect=1e-34]} {Celegans: WBGene00001133, eat-2, Neuronal acetylcholine receptor subunit eat-2, [Score=137, Expect=5e-36]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=130, Expect=2e-33]} {RNA1509_53098} {RNA1310_100091} {RNA815_45198}
3. MligTC455_51358 183 3.81 Mlig455_064055

Neo: -

Age: -

 0.978 - - 0.978 - - - Mlig455_064055 {REF} {Length: 1393} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48446} {RNA1310_90226, RNA1509_48446} {RNA1509_48446, RNA815_47603}
4. MligTC455_34332 28 0.59 Mlig455_005058

Neo: -

Age: -

 NKX3-2 0.967 - - 0.967 - - - Mlig455_005058 {REF} {Length: 1884} {Pfam: Homeodomain [PF00046.31, score=68.8]} {Human: ENSG00000109705, NKX3-2, NK3 homeobox 2, [RH, Score=118, Expect=4e-29]} {Mouse: ENSMUSG00000049691, Nkx3-2, NK3 homeobox 2, [RH, Score=118, Expect=2e-29]} {Dmel: FBgn0004862, bap, bagpipe, [RH, Score=115, Expect=7e-28]} {Celegans: WBGene00003377, mls-2, Mesodermal Lineage Specification, [Score=90.9, Expect=7e-20]} {Smed: dd_Smed_v6_34285_0_1, dd_Smed_v6_34285_0_1, [RH, Score=94.0, Expect=4e-23]}
5. MligTC455_34333 29 0.59 Mlig455_005256

Neo: -

Age: -

 NKX3-2 0.967 - - 0.967 - - - Mlig455_005256 {REF} {Length: 1971} {Pfam: Homeodomain [PF00046.31, score=68.8]} {Human: ENSG00000109705, NKX3-2, NK3 homeobox 2, [RH, Score=119, Expect=3e-29]} {Mouse: ENSMUSG00000049691, Nkx3-2, NK3 homeobox 2, [RH, Score=119, Expect=2e-29]} {Dmel: FBgn0004862, bap, bagpipe, [RH, Score=115, Expect=5e-28]} {Celegans: WBGene00003377, mls-2, Mesodermal Lineage Specification, [Score=89.7, Expect=2e-19]} {Smed: dd_Smed_v6_34285_0_1, dd_Smed_v6_34285_0_1, [RH, Score=94.0, Expect=4e-23]}
6. MligTC455_02589 124 2.59 Mlig455_027271

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.509

 MX1 0.964 - - 0.964 - - - Mlig455_027271 {REF} {Length: 4609} {Pfam: Dynamin central region [PF01031.22, score=152.2]; Dynamin GTPase effector domain [PF02212.20, score=57.4]; Family with sequence similarity 184, A and B [PF15665.7, score=20.6]} {Human: ENSG00000157601, MX1, MX dynamin like GTPase 1, [Score=136, Expect=2e-34]; ENSG00000183486, MX2, MX dynamin like GTPase 2, [Score=132, Expect=4e-33]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [Score=144, Expect=3e-37]} {RNA1509_19894, RNA1509_52436, RNA1509_54554, RNA1509_8812} {RNA1310_1482.2, RNA1509_19894, RNA1509_52436, RNA1509_54554, RNA1509_8812} {RNA1509_19894, RNA1509_52436, RNA1509_54554, RNA1509_8812, RNA815_3194}
7. MligTC455_11387 14 0.29 Mlig455_030326

Neo: -

Age: -

 0.958 - - 0.958 - - - Mlig455_030326 {REF} {Length: 829} {NoTransDecoderORF} {RNA1509_23562} {RNA1310_94583} {RNA815_47071}
8. MligTC455_37391 23 0.47 Mlig455_028202, Mlig455_039425, Mlig455_045479, Mlig455_056344

Neo: -

Age: -

 0.958 - - 0.958 - - -

Mlig455_028202 {REF} {Length: 764} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=30.5]} {RNA1310_17986} {RNA815_61383}

Mlig455_039425 {REF} {Length: 905} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=30.5]} {RNA1310_17986} {RNA815_61383}

Mlig455_045479 {REF} {Length: 764} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=30.5]} {RNA1310_17986} {RNA815_61383}

Mlig455_056344 {REF} {Length: 707} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=30.6]} {RNA1310_17986} {RNA815_61383}
9. MligTC455_05913 13 0.28 Mlig455_064325, Mlig455_064355

Neo: -

Age: -

 0.957 - - 0.957 - - -

Mlig455_064325 {REF} {Length: 2163} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=137.7]} {RNA1509_19020} {RNA1310_13852} {RNA815_7058}

Mlig455_064355 {REF} {Length: 470} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=33.1]} {RNA1509_19020} {RNA1310_13852} {RNA815_7058}
10. MligTC455_08017 5 0.11 Mlig455_027000

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_027000 {REF} {Length: 1360} {TRANSSPLICED} {RNA1310_47153} {RNA815_22265}
11. MligTC455_09290 23 0.48 Mlig455_057456

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_057456 {REF} {Length: 350} {NoTransDecoderORF} {RNA1310_95940}
12. MligTC455_13832 178 3.71 Mlig455_065431

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_065431 {REF} {Length: 1865} {NoTransDecoderORF} {RNA1509_9010} {RNA1310_38702, RNA1509_9010} {RNA1509_9010, RNA815_4929.1}
13. MligTC455_15805 9 0.19 Mlig455_023117

Neo: -

Age: -

 KCNK18 0.957 - - 0.957 - - - Mlig455_023117 {REF} {Length: 1703} {Pfam: Ion channel [PF07885.18, score=119.1]} {Human: ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=101, Expect=6e-23]; ENSG00000100433, KCNK10, potassium two pore domain channel subfamily K member 10, [Score=96.3, Expect=1e-20]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=103, Expect=7e-24]} {Dmel: FBgn0085425, CG34396, [Score=155, Expect=3e-40]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=155, Expect=1e-42]} {Smed: dd_Smed_v6_17586_0_1, dd_Smed_v6_17586_0_1, [Score=338, Expect=1e-112]} {RNA1310_118169}
14. MligTC455_24089 12 0.25 Mlig455_018092

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_018092 {REF} {Length: 2904} {RNA1509_43825} {RNA1310_93759} {RNA815_63754}
15. MligTC455_37917 34 0.71 Mlig455_070471

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_070471 {REF} {Length: 638} {NoTransDecoderORF} {RNA1310_105024}
16. MligTC455_18700 19 0.4 Mlig455_003655

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_003655 {REF} {Length: 471} {NoTransDecoderORF} {RNA1310_85204}
17. MligTC455_45851 33 0.69 Mlig455_020386

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_020386 {REF} {Length: 590} {RNA1509_48193} {RNA1310_97125}
18. MligTC455_43193 359 7.49 Mlig455_033211

Neo: -

Age: -

 0.955 - - 0.955 - - - Mlig455_033211 {REF} {Length: 280} {NoTransDecoderORF} {RNA1310_121983}
19. MligTC455_28787 30 0.62 Mlig455_043846, Mlig455_054188, Mlig455_060734

Neo: -

Age: logFC(26M/2M)=-0.737

 ANKRD50 0.954 - - 0.954 - - -

Mlig455_043846 {REF} {Length: 665} {Pfam: DDE superfamily endonuclease [PF13358.8, score=23.1]} {Smed: dd_Smed_v6_42273_0_1, dd_Smed_v6_42273_0_1, [RH, Score=43.1, Expect=6e-06]}

Mlig455_054188 {REF} {Length: 3683} {Pfam: Mab-21 protein [PF03281.16, score=27.1]} {RNA1509_27730} {RNA1310_30964} {RNA815_2387.1}

Mlig455_060734 {REF} {Length: 6592} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=88.1]; Ankyrin repeats (many copies) [PF13637.8, score=65.2]; Ankyrin repeats (many copies) [PF13857.8, score=58.9]; Ankyrin repeat [PF13606.8, score=53.0]; Ankyrin repeat [PF00023.32, score=41.3]; Mab-21 protein [PF03281.16, score=25.4]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=86.3, Expect=3e-16]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=89.7, Expect=2e-17]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=74.7, Expect=6e-13]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=71.6, Expect=3e-12]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=84.0, Expect=4e-16]} {RNA1509_27730} {RNA1310_24666.1} {RNA815_2426.1}
20. MligTC455_34641 301 6.27 Mlig455_027038

Neo: -

Age: -

 ATP2A1 0.954 - - 0.954 - - - Mlig455_027038 {REF} {Length: 4352} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=191.8]; Cation transporting ATPase, C-terminus [PF00689.23, score=146.4]; Cation transport ATPase (P-type) [PF13246.8, score=76.4]; haloacid dehalogenase-like hydrolase [PF00702.28, score=73.8]; Cation transporter/ATPase, N-terminus [PF00690.28, score=67.0]; haloacid dehalogenase-like hydrolase [PF12710.9, score=30.5]; haloacid dehalogenase-like hydrolase [PF08282.14, score=30.2]} {Human: ENSG00000196296, ATP2A1, ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, [RH, Score=1462, Expect=0.0]; ENSG00000174437, ATP2A2, ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2, [RH, Score=1446, Expect=0.0]; ENSG00000074370, ATP2A3, ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3, [RH, Score=1403, Expect=0.0]} {Mouse: ENSMUSG00000030730, Atp2a1, ATPase, Ca++ transporting, cardiac muscle, fast twitch 1, [RH, Score=1456, Expect=0.0]; ENSMUSG00000029467, Atp2a2, ATPase, Ca++ transporting, cardiac muscle, slow twitch 2, [RH, Score=1450, Expect=0.0]; ENSMUSG00000020788, Atp2a3, ATPase, Ca++ transporting, ubiquitous, [RH, Score=1404, Expect=0.0]} {Dmel: FBgn0263006, SERCA, Sarco/endoplasmic reticulum Ca(2+)-ATPase, [RH, Score=1493, Expect=0.0]} {Celegans: WBGene00004736, sca-1, Calcium-transporting ATPase, [RH, Score=1466, Expect=0.0]} {Smed: dd_Smed_v6_1772_0_1, dd_Smed_v6_1772_0_1, [RH, Score=1613, Expect=0.0]} {RNA1509_20343} {RNA1310_3029.1} {RNA815_2104.2}
21. MligTC455_49929 76 1.59 Mlig455_001249, Mlig455_001253

Neo: -

Age: Down-Up-Up

 0.951 - - 0.951 - - -

Mlig455_001249 {REF} {Length: 984} {RNA1310_33799.1} {RNA815_47109}

Mlig455_001253 {REF} {Length: 1260} {RNA1310_33799.1} {RNA815_45980}
22. MligTC455_12878 91 1.89 Mlig455_025598, Mlig455_052895

Neo: -

Age: -

 0.95 - - 0.950 - - -

Mlig455_025598 {REF} {Length: 345} {NoTransDecoderORF} {RNA1310_75777}

Mlig455_052895 {REF} {Length: 467} {NoTransDecoderORF} {RNA1310_75777}
23. MligTC455_14145 21 0.44 Mlig455_019525

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_019525 {REF} {Length: 589} {RNA1310_32376.1} {RNA815_45036}
24. MligTC455_38839 18 0.37 Mlig455_067019

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_067019 {REF} {Length: 1403} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=59.4]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.6]} {Smed: dd_Smed_v6_42389_0_1, dd_Smed_v6_42389_0_1, [RH, Score=141, Expect=1e-38]} {RNA1310_19511} {RNA815_7578}
25. MligTC455_41673 26 0.54 Mlig455_035834

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_035834 {REF} {Length: 1561} {NoTransDecoderORF} {RNA1310_64046} {RNA815_37581}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA