M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07725

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07725 105 2.19 Mlig455_042369

Neo: -

Age: -

 Mlig455_042369 {REF} {Length: 4227} {Pfam: AIG1 family [PF04548.18, score=27.4]; 50S ribosome-binding GTPase [PF01926.25, score=25.2]; Septin [PF00735.20, score=24.6]; Dynamin family [PF00350.25, score=19.1]} {RNA1509_47470} {RNA1310_7674, RNA1509_47470} {RNA1509_47470, RNA815_12047}

Cumulative graph for MligTC455_07725

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.276 1.935 0.99970 1.00000
RegionR2 1.451 1.935 0.27627 0.66176
RegionR3 1.286 1.935 0.30642 0.84627
RegionR4 1.711 1.935 0.23962 0.53571
RegionR5 1.458 1.935 0.24021 0.55178
RegionR6 1.604 1.935 0.21546 0.79341
RegionR7 -2.896 1.935 1.00000 1.00000
RegionR8 -2.336 1.935 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.087 1.935 0.32932 1.00000
RegenerationR2 0.674 1.935 0.37836 0.80044
RegenerationR3 1.437 1.935 0.14375 0.57110
RegenerationR4 0.553 1.935 0.58016 0.90555
RegenerationR5 0.306 1.935 0.73763 0.96743
RegenerationR6 1.5 1.935 0.10903 0.40850
RegenerationBL -2.236 1.935 1.00000 1.00000
RegenerationTP 4.579 1.935 0.05238 0.37452


Genes with expression patterns similar to MligTC455_07725

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07725 105 2.19 Mlig455_042369

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_042369 {REF} {Length: 4227} {Pfam: AIG1 family [PF04548.18, score=27.4]; 50S ribosome-binding GTPase [PF01926.25, score=25.2]; Septin [PF00735.20, score=24.6]; Dynamin family [PF00350.25, score=19.1]} {RNA1509_47470} {RNA1310_7674, RNA1509_47470} {RNA1509_47470, RNA815_12047}
2. MligTC455_16400 316 6.58 Mlig455_020528

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_020528 {REF} {Length: 1266} {TRANSSPLICED} {RNA1509_18821, RNA1509_33940} {RNA1310_6782.1, RNA1509_18821, RNA1509_33940} {RNA1509_18821, RNA1509_33940, RNA815_4292}
3. MligTC455_32083 95 1.99 Mlig455_041859

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.653

 0.969 - - - - - 0.969 Mlig455_041859 {REF} {Length: 2652} {TRANSSPLICED} {RNA1509_19305} {RNA1310_20429.1} {RNA815_7869}
4. MligTC455_38891 74 1.54 Mlig455_064866

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_064866 {REF} {Length: 5908} {TRANSSPLICED} {Pfam: CD20-like family [PF04103.17, score=31.4]} {RNA1509_32088, RNA1509_47982} {RNA1310_22607, RNA1509_47982} {RNA1509_47982, RNA815_13989.1}
5. MligTC455_41826 179 3.72 Mlig455_024473

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_024473 {REF} {Length: 2269} {RNA1509_48745, RNA1509_54986} {RNA1310_27046, RNA1509_48745, RNA1509_54986} {RNA1509_48745, RNA1509_54986, RNA815_24708}
6. MligTC455_26190 164 3.42 Mlig455_036963, Mlig455_069814

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.523

 XIAP 0.962 - - - - - 0.962

Mlig455_036963 {REF} {Length: 2387} {Pfam: Inhibitor of Apoptosis domain [PF00653.23, score=41.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=41.1]; Prokaryotic RING finger family 4 [PF14447.8, score=21.6]} {Human: ENSG00000101966, XIAP, X-linked inhibitor of apoptosis, [Score=79.7, Expect=2e-15]} {Mouse: ENSMUSG00000025860, Xiap, X-linked inhibitor of apoptosis, [Score=78.2, Expect=6e-15]} {Dmel: FBgn0015247, Diap2, Death-associated inhibitor of apoptosis 2, [Score=82.8, Expect=1e-16]} {Smed: dd_Smed_v6_4626_0_2, dd_Smed_v6_4626_0_2, [Score=65.1, Expect=3e-11]} {RNA1509_50002} {RNA1310_7949.1} {RNA815_4630}

Mlig455_069814 {REF} {Length: 7657} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=40.7]; Inhibitor of Apoptosis domain [PF00653.23, score=37.3]; Prokaryotic RING finger family 4 [PF14447.8, score=20.8]} {Human: ENSG00000101966, XIAP, X-linked inhibitor of apoptosis, [Score=79.7, Expect=5e-15]} {Mouse: ENSMUSG00000025860, Xiap, X-linked inhibitor of apoptosis, [Score=78.2, Expect=9e-15]} {Dmel: FBgn0015247, Diap2, Death-associated inhibitor of apoptosis 2, [Score=82.8, Expect=2e-16]} {Smed: dd_Smed_v6_4626_0_1, dd_Smed_v6_4626_0_1, [Score=62.4, Expect=3e-10]} {RNA1509_28705} {RNA1310_8706.1} {RNA815_4630}
7. MligTC455_46547 101 2.11 Mlig455_013892

Neo: -

Age: -

Region-enriched R6: 3.545/0.03138

 0.959 - - - - - 0.959 Mlig455_013892 {REF} {Length: 829} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57449} {RNA1310_78138} {RNA815_50926}
8. MligTC455_16207 81 1.69 Mlig455_066558

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_066558 {REF} {Length: 207} {NoTransDecoderORF} {RNA1509_24431} {RNA1310_114763} {RNA815_13521.2}
9. MligTC455_12034 146 3.05 Mlig455_020314

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_020314 {REF} {Length: 687} {RNA1509_51749} {RNA1310_44996} {RNA815_8786}
10. MligTC455_41431 47 0.98 Mlig455_006202

Neo: Int S/G2/M

Age: Up-Down-Up

Region-enriched R4: 4.927/0.04615

 LSM3 0.954 - - - - - 0.954 Mlig455_006202 {REF} {Length: 715} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=69.8]} {Human: ENSG00000170860, LSM3, LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, [RH, Score=152, Expect=4e-49]} {Mouse: ENSMUSG00000034192, Lsm3, LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, [RH, Score=152, Expect=3e-49]} {Dmel: FBgn0051184, LSm3, Like Sm 3, [RH, Score=154, Expect=4e-50]} {Celegans: WBGene00003077, lsm-3, LSM Sm-like protein, [RH, Score=143, Expect=8e-46]} {Smed: dd_Smed_v6_1641_0_1, dd_Smed_v6_1641_0_1, [RH, Score=144, Expect=4e-46]} {RNA1509_24120} {RNA1310_36385} {RNA815_14268.3}
11. MligTC455_48790 413 8.61 Mlig455_011702

Neo: -

Age: logFC(26M/2M)=-0.552

Region-enriched R2: 1.934/0.02894

 0.953 - - - - - 0.953 Mlig455_011702 {REF} {Length: 1287} {RNA1509_23745, RNA1509_59166} {RNA1310_26794.1, RNA1509_23745, RNA1509_59166} {RNA1509_23745, RNA1509_59166, RNA815_13204}
12. MligTC455_20985 348 7.25 Mlig455_000485

Neo: -

Age: Down-Up-Down

Region-enriched R4: 2.494/0.00555

 0.952 - - - - - 0.952 Mlig455_000485 {REF} {Length: 961} {TRANSSPLICED} {RNA1509_31693} {RNA1310_36320} {RNA815_19506}
13. MligTC455_34083 222 4.63 Mlig455_015545

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_015545 {REF} {Length: 1075} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_34730} {RNA1310_60543} {RNA815_37583}
14. MligTC455_49543 19 0.39 Mlig455_048074

Neo: -

Age: -

 CHRNA7 0.95 - - - - - 0.950 Mlig455_048074 {REF} {Length: 2720} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=204.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=172.0]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [RH, Score=409, Expect=7e-137]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [RH, Score=408, Expect=3e-137]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [RH, Score=405, Expect=8e-136]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [RH, Score=408, Expect=2e-137]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=448, Expect=3e-152]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [RH, Score=384, Expect=2e-128]} {Smed: dd_Smed_v6_8058_0_1, dd_Smed_v6_8058_0_1, [RH, Score=456, Expect=3e-156]} {RNA1509_57591} {RNA1310_22372.1} {RNA815_15627}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA