M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07863

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07863 18 0.37 Mlig455_009099

Neo: -

Age: -

 Mlig455_009099 {REF} {Length: 616} {NoTransDecoderORF} {RNA1509_17826} {RNA1310_24382} {RNA815_20162}

Cumulative graph for MligTC455_07863

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 4.537 0.781 0.36745 1.00000
RegionR2 -1.463 0.781 1.00000 1.00000
RegionR3 0.064 0.781 0.74774 1.00000
RegionR4 1.279 0.781 0.50992 0.83605
RegionR5 0.486 0.781 0.64377 0.99584
RegionR6 0.019 0.781 0.98206 1.00000
RegionR7 -2.332 0.781 1.00000 1.00000
RegionR8 -2.591 0.781 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.263 0.781 0.97319 1.00000
RegenerationR2 1.148 0.781 1.00000 1.00000
RegenerationR3 0.778 0.781 0.74785 0.96375
RegenerationR4 -1.313 0.781 0.95529 1.00000
RegenerationR5 0.118 0.781 0.69134 0.94828
RegenerationR6 -0.659 0.781 0.97862 1.00000
RegenerationBL 1.235 0.781 1.00000 1.00000
RegenerationTP 1.153 0.781 1.00000 1.00000


Genes with expression patterns similar to MligTC455_07863

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07863 18 0.37 Mlig455_009099

Neo: -

Age: -

 1 1.000 - - - - - Mlig455_009099 {REF} {Length: 616} {NoTransDecoderORF} {RNA1509_17826} {RNA1310_24382} {RNA815_20162}
2. MligTC455_25397 147 3.05 Mlig455_029057

Neo: -

Age: logFC(26M/2M)=0.708

 BIRC2 0.982 0.982 - - - - - Mlig455_029057 {REF} {Length: 1866} {Pfam: Inhibitor of Apoptosis domain [PF00653.23, score=45.3]} {Human: ENSG00000110330, BIRC2, baculoviral IAP repeat containing 2, [Score=62.4, Expect=2e-10]; ENSG00000023445, BIRC3, baculoviral IAP repeat containing 3, [Score=60.1, Expect=1e-09]} {Mouse: ENSMUSG00000032000, Birc3, baculoviral IAP repeat-containing 3, [Score=62.0, Expect=2e-10]; ENSMUSG00000057367, Birc2, baculoviral IAP repeat-containing 2, [Score=61.2, Expect=3e-10]; ENSMUSG00000038840, Birc7, baculoviral IAP repeat-containing 7 (livin), [Score=61.2, Expect=1e-10]} {Dmel: FBgn0015247, Diap2, Death-associated inhibitor of apoptosis 2, [Score=65.1, Expect=1e-11]} {RNA1509_10134} {RNA1310_2992.1} {RNA815_964.1}
3. MligTC455_51116 84 1.75 Mlig455_061013

Neo: -

Age: -

 TPK1 0.969 0.969 - - - - - Mlig455_061013 {REF} {Length: 1916} {TRANSSPLICED} {Pfam: Thiamin pyrophosphokinase, catalytic domain [PF04263.18, score=106.6]; Thiamin pyrophosphokinase, vitamin B1 binding domain [PF04265.16, score=53.0]} {Human: ENSG00000285075, TPK1, thiamin pyrophosphokinase 1, [RH, Score=127, Expect=3e-35]; ENSG00000196511, TPK1, thiamin pyrophosphokinase 1, [RH, Score=127, Expect=3e-35]} {Mouse: ENSMUSG00000029735, Tpk1, thiamine pyrophosphokinase, [RH, Score=122, Expect=1e-33]} {Dmel: FBgn0037942, CG14721, [RH, Score=100, Expect=2e-24]} {Celegans: WBGene00014027, tpk-1, Thiamin pyrophosphokinase 1, [RH, Score=91.7, Expect=4e-22]} {Smed: dd_Smed_v6_7913_0_2, dd_Smed_v6_7913_0_2, [RH, Score=116, Expect=2e-31]} {RNA1310_31001} {RNA815_16669}
4. MligTC455_12449 39 0.82 Mlig455_021491, Mlig455_067375

Neo: -

Age: -

 0.965 0.965 - - - - -

Mlig455_021491 {REF} {Length: 1699} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=64.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=30.8]} {Dmel: FBgn0038874, ETHR, [Score=50.4, Expect=2e-06]} {Smed: dd_Smed_v6_24805_0_1, dd_Smed_v6_24805_0_1, [Score=197, Expect=1e-58]} {RNA1310_34195} {RNA815_36858}

Mlig455_067375 {REF} {Length: 1699} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=64.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=30.7]} {Dmel: FBgn0037408, NPFR, Neuropeptide F receptor, [Score=48.9, Expect=7e-06]} {Smed: dd_Smed_v6_24805_0_1, dd_Smed_v6_24805_0_1, [Score=197, Expect=1e-58]} {RNA1310_34195} {RNA815_36858}
5. MligTC455_20419 55 1.14 Mlig455_018666, Mlig455_018868

Neo: -

Age: -

 SCNN1G 0.961 0.961 - - - - -

Mlig455_018666 {REF} {Length: 2035} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=124.7]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=58.9, Expect=1e-08]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=50.1, Expect=4e-06]} {Smed: dd_Smed_v6_15195_0_1, dd_Smed_v6_15195_0_1, [RH, Score=233, Expect=3e-69]} {RNA815_64758}

Mlig455_018868 {REF} {Length: 2077} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=123.9]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=52.0, Expect=3e-06]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=62.4, Expect=1e-09]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=49.3, Expect=6e-06]} {Smed: dd_Smed_v6_15195_0_1, dd_Smed_v6_15195_0_1, [RH, Score=234, Expect=1e-69]} {RNA815_64758}
6. MligTC455_32517 153 3.19 Mlig455_064987

Neo: -

Age: Up-Down-Up

 OTUD7B 0.96 0.960 - - - - - Mlig455_064987 {REF} {Length: 3738} {TRANSSPLICED} {Pfam: OTU-like cysteine protease [PF02338.21, score=67.6]; A20-like zinc finger [PF01754.18, score=22.3]} {Human: ENSG00000264522, OTUD7B, OTU deubiquitinase 7B, [RH, Score=251, Expect=6e-72]} {Mouse: ENSMUSG00000038495, Otud7b, OTU domain containing 7B, [RH, Score=251, Expect=5e-72]; ENSMUSG00000033510, Otud7a, OTU domain containing 7A, [RH, Score=247, Expect=1e-71]} {Dmel: FBgn0037734, trbd, trabid, [Score=125, Expect=3e-29]} {Celegans: WBGene00021733, otub-2, OTUBain deubiquitylating protease homolog, [RH, Score=238, Expect=4e-69]} {Smed: dd_Smed_v6_10637_0_1, dd_Smed_v6_10637_0_1, [Score=246, Expect=3e-73]} {RNA1509_13944} {RNA1310_14040.1} {RNA815_8064}
7. MligTC455_30956 236 4.92 Mlig455_011971, Mlig455_068353

Neo: -

Age: -

 0.959 0.959 - - - - -

Mlig455_011971 {REF} {Length: 4032} {TRANSSPLICED} {RNA1509_10225} {RNA1310_3653.1} {RNA815_1165}

Mlig455_068353 {REF} {Length: 5735} {TRANSSPLICED} {RNA1509_30964} {RNA1310_3653.1} {RNA815_1165}
8. MligTC455_35233 386 8.04 Mlig455_017335

Neo: -

Age: Up-Down-Up

 0.957 0.957 - - - - - Mlig455_017335 {REF} {Length: 993} {RNA1509_54850} {RNA1310_38804} {RNA815_37731.1}
9. MligTC455_25374 428 8.91 Mlig455_036389, Mlig455_036390, Mlig455_036391, Mlig455_054557

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.690

Regeneration-upregulated BL: 5.459

Regeneration-enriched BL: 5.459

 0.956 0.956 - - - - -

Mlig455_036389 {REF} {Length: 860} {NoTransDecoderORF} {RNA1509_40044} {RNA1310_33232} {RNA815_16463}

Mlig455_036390 {REF} {Length: 5024} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}

Mlig455_036391 {REF} {Length: 3445} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}

Mlig455_054557 {REF} {Length: 6330} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}
10. MligTC455_28797 142 2.95 Mlig455_016275

Neo: -

Age: -

 SRR 0.956 0.956 - - - - - Mlig455_016275 {REF} {Length: 3121} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=180.7]; Glycogen debranching enzyme N terminal [PF12439.10, score=18.7]} {Human: ENSG00000167720, SRR, serine racemase, [Score=106, Expect=1e-25]} {Mouse: ENSMUSG00000001323, Srr, serine racemase, [Score=94.7, Expect=2e-21]} {Dmel: FBgn0037684, CG8129, [Score=88.2, Expect=5e-19]} {Celegans: WBGene00010456, K01C8.1, [Score=85.9, Expect=2e-18]} {Smed: dd_Smed_v6_6737_0_1, dd_Smed_v6_6737_0_1, [Score=114, Expect=3e-28]} {RNA1509_48799, RNA1509_54968, RNA1509_59455} {RNA1310_28701.1, RNA1509_48799, RNA1509_59455} {RNA1509_48799, RNA1509_59455, RNA815_19720}
11. MligTC455_30795 267 5.55 Mlig455_038560, Mlig455_052196

Neo: -

Age: Down-Up-Down

 0.954 0.954 - - - - -

Mlig455_038560 {REF} {Length: 898} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_28092} {RNA815_16672}

Mlig455_052196 {REF} {Length: 891} {RNA1509_51837} {RNA1310_28092} {RNA815_16672}
12. MligTC455_32350 163 3.4 Mlig455_026371

Neo: -

Age: -

 0.954 0.954 - - - - - Mlig455_026371 {REF} {Length: 3693} {TRANSSPLICED} {RNA1509_10757, RNA1509_39547} {RNA1310_3174, RNA1509_39547} {RNA1509_39547, RNA815_3129}
13. MligTC455_30796 133 2.77 Mlig455_053456

Neo: -

Age: -

 0.952 0.952 - - - - - Mlig455_053456 {REF} {Length: 2288} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.0]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=60.1, Expect=5e-11]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}
14. MligTC455_42473 118 2.46 Mlig455_016841, Mlig455_016854, Mlig455_070015

Neo: -

Age: -

 0.951 0.951 - - - - -

Mlig455_016841 {REF} {Length: 587} {RNA1310_62504} {RNA815_41252}

Mlig455_016854 {REF} {Length: 587} {RNA1310_62504} {RNA815_41252}

Mlig455_070015 {REF} {Length: 600} {RNA1310_62504} {RNA815_41252}
15. MligTC455_48255 87 1.81 Mlig455_037389

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.857

 0.95 0.950 - - - - - Mlig455_037389 {REF} {Length: 2777} {Pfam: Lectin C-type domain [PF00059.23, score=38.1]} {RNA1310_22051} {RNA815_28288}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA