M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08076

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08076 246 5.11 Mlig455_043208

Neo: -

Age: -

 Mlig455_043208 {REF} {Length: 2948} {Pfam: Family of unknown function (DUF5641) [PF18701.3, score=24.6]} {RNA1509_48096} {RNA1310_47344} {RNA815_2647}

Cumulative graph for MligTC455_08076

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.157 2.723 0.12279 0.71667
RegionR2 -0.16 2.723 0.85244 1.00000
RegionR3 -0.564 2.723 0.41435 0.93939
RegionR4 0.163 2.723 0.83204 1.00000
RegionR5 0.883 2.723 0.12527 0.35665
RegionR6 -0.447 2.723 0.53572 1.00000
RegionR7 -1.668 2.723 0.10601 0.61856
RegionR8 -0.364 2.723 0.71484 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.838 2.723 0.11205 0.83608
RegenerationR2 0.374 2.723 0.61366 0.92067
RegenerationR3 1.42 2.723 0.09539 0.49613
RegenerationR4 1.377 2.723 0.10425 0.49809
RegenerationR5 0.639 2.723 0.38236 0.78818
RegenerationR6 1.237 2.723 0.15066 0.47586
RegenerationBL 1.31 2.723 0.17736 0.50546
RegenerationTP 1.057 2.723 0.32617 0.77096


Genes with expression patterns similar to MligTC455_08076

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08076 246 5.11 Mlig455_043208

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043208 {REF} {Length: 2948} {Pfam: Family of unknown function (DUF5641) [PF18701.3, score=24.6]} {RNA1509_48096} {RNA1310_47344} {RNA815_2647}
2. MligTC455_41023 267 5.56 Mlig455_010533, Mlig455_061800, Mlig455_061841

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.367

 FAM206A 1.786 - - 0.970 0.816 - -

Mlig455_010533 {REF} {Length: 1349} {TRANSSPLICED} {Pfam: Glycine cleavage H-protein [PF01597.21, score=23.6]} {Human: ENSG00000119328, FAM206A, family with sequence similarity 206 member A, [RH, Score=78.2, Expect=1e-17]} {Mouse: ENSMUSG00000038827, Fam206a, family with sequence similarity 206, member A, [RH, Score=80.5, Expect=8e-19]} {Dmel: FBgn0260464, CG9288, [RH, Score=63.9, Expect=2e-12]} {Smed: dd_Smed_v6_6274_0_1, dd_Smed_v6_6274_0_1, [RH, Score=62.0, Expect=3e-12]} {RNA1509_30206} {RNA1310_36222} {RNA815_20614}

Mlig455_061800 {REF} {Length: 1355} {TRANSSPLICED} {Pfam: Glycine cleavage H-protein [PF01597.21, score=23.6]} {Human: ENSG00000119328, FAM206A, family with sequence similarity 206 member A, [RH, Score=78.2, Expect=1e-17]} {Mouse: ENSMUSG00000038827, Fam206a, family with sequence similarity 206, member A, [RH, Score=80.5, Expect=8e-19]} {Dmel: FBgn0260464, CG9288, [RH, Score=63.9, Expect=2e-12]} {Smed: dd_Smed_v6_6274_0_1, dd_Smed_v6_6274_0_1, [RH, Score=62.0, Expect=3e-12]} {RNA1509_30206} {RNA1310_36222, RNA1509_30206} {RNA1509_30206, RNA815_20614}

Mlig455_061841 {REF} {Length: 1348} {TRANSSPLICED} {Pfam: Glycine cleavage H-protein [PF01597.21, score=23.6]} {Human: ENSG00000119328, FAM206A, family with sequence similarity 206 member A, [RH, Score=78.2, Expect=1e-17]} {Mouse: ENSMUSG00000038827, Fam206a, family with sequence similarity 206, member A, [RH, Score=80.5, Expect=8e-19]} {Dmel: FBgn0260464, CG9288, [RH, Score=63.9, Expect=2e-12]} {Smed: dd_Smed_v6_6274_0_1, dd_Smed_v6_6274_0_1, [RH, Score=62.0, Expect=3e-12]} {RNA1509_30206} {RNA1310_36222} {RNA815_20614}
3. MligTC455_14763 992 20.66 Mlig455_029514

Neo: -

Age: logFC(26M/2M)=-0.324

Region-enriched R2: 1.881/0.00791

 0.963 - - 0.963 - - - Mlig455_029514 {REF} {Length: 2204} {Pfam: Fuseless [PF15993.7, score=18.4]} {RNA1509_7935} {RNA1310_12227} {RNA815_4249}
4. MligTC455_34792 238 4.96 Mlig455_045574

Neo: -

Age: logFC(26M/2M)=-0.239

 0.961 - - 0.961 - - - Mlig455_045574 {REF} {Length: 4478} {Smed: dd_Smed_v6_27312_0_1, dd_Smed_v6_27312_0_1, [RH, Score=160, Expect=9e-40]} {RNA1509_6675} {RNA1310_2307, RNA1509_6675} {RNA1509_6675, RNA815_650}
5. MligTC455_31891 52 1.08 Mlig455_062869

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.362

 0.96 - - 0.960 - - - Mlig455_062869 {REF} {Length: 1033} {TRANSSPLICED} {RNA1509_11073} {RNA1310_6149} {RNA815_1772.1}
6. MligTC455_12971 15 0.3 Mlig455_023929

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_023929 {REF} {Length: 305} {NoTransDecoderORF}
7. MligTC455_50846 98 2.04 Mlig455_063437, Mlig455_063465

Neo: -

Age: Down-Up-Down

 MPEG1 0.956 - - 0.956 - - -

Mlig455_063437 {REF} {Length: 2494} {Pfam: MAC/Perforin domain [PF01823.21, score=65.4]} {Human: ENSG00000197629, MPEG1, macrophage expressed 1, [Score=344, Expect=7e-108]} {Mouse: ENSMUSG00000046805, Mpeg1, macrophage expressed gene 1, [Score=335, Expect=1e-104]; ENSMUSG00000040065, Pfpl, pore forming protein-like, [Score=323, Expect=4e-100]} {Smed: dd_Smed_v6_983_0_1, dd_Smed_v6_983_0_1, [Score=322, Expect=3e-100]} {RNA1310_13506.2} {RNA815_6129.1}

Mlig455_063465 {REF} {Length: 2046} {Human: ENSG00000197629, MPEG1, macrophage expressed 1, [Score=174, Expect=2e-46]} {Mouse: ENSMUSG00000046805, Mpeg1, macrophage expressed gene 1, [Score=164, Expect=6e-43]; ENSMUSG00000040065, Pfpl, pore forming protein-like, [Score=160, Expect=7e-42]} {Smed: dd_Smed_v6_12605_0_1, dd_Smed_v6_12605_0_1, [Score=145, Expect=2e-38]} {RNA1310_13506.2} {RNA815_6129.1}
8. MligTC455_37140 30 0.62 Mlig455_048106

Neo: -

Age: -

 TRPM3 0.954 - - 0.954 - - - Mlig455_048106 {REF} {Length: 4898} {TRANSSPLICED} {Pfam: SLOG in TRPM [PF18139.3, score=123.8]; SLOG in TRPM, prokaryote [PF18171.3, score=34.7]; Ion transport protein [PF00520.33, score=27.4]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=349, Expect=2e-98]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=341, Expect=1e-95]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=335, Expect=6e-94]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=232, Expect=1e-61]} {Smed: dd_Smed_v6_9288_0_1, dd_Smed_v6_9288_0_1, [Score=473, Expect=4e-145]} {RNA1509_6375} {RNA1310_1012} {RNA815_5496.1}
9. MligTC455_20215 53 1.1 Mlig455_034733

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_034733 {REF} {Length: 1330} {NoTransDecoderORF} {RNA1310_91476} {RNA815_62025}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA