M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08431

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08431 13 0.27 Mlig455_070165

Neo: -

Age: -

 Mlig455_070165 {REF} {Length: 481} {NoTransDecoderORF}

Cumulative graph for MligTC455_08431

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.612 0.639 1.00000 1.00000
RegionR2 1.487 0.639 1.00000 1.00000
RegionR3 0.35 0.639 0.99966 1.00000
RegionR4 -1.229 0.639 1.00000 1.00000
RegionR5 -0.167 0.639 1.00000 1.00000
RegionR6 0.398 0.639 0.99971 1.00000
RegionR7 0.42 0.639 1.00000 1.00000
RegionR8 0.353 0.639 0.99988 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.83 0.639 0.99973 1.00000
RegenerationR2 3.045 0.639 0.09442 0.48914
RegenerationR3 3.31 0.639 0.06212 0.42112
RegenerationR4 2.78 0.639 0.06202 0.39892
RegenerationR5 4.079 0.639 0.04386 0.34336
RegenerationR6 4.077 0.639 0.10589 0.40348
RegenerationBL 0.584 0.639 0.99967 1.00000
RegenerationTP 0.663 0.639 1.00000 1.00000


Genes with expression patterns similar to MligTC455_08431

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08431 13 0.27 Mlig455_070165

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_070165 {REF} {Length: 481} {NoTransDecoderORF}
2. MligTC455_13173 34 0.71 Mlig455_006243

Neo: -

Age: -

Region-enriched R4: 8.199/0.00007

 0.98 - - - - 0.980 - Mlig455_006243 {REF} {Length: 1210} {RNA1310_54678} {RNA815_22239.1}
3. MligTC455_23460 40 0.83 Mlig455_008456, Mlig455_008497, Mlig455_008498, Mlig455_015305

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.544

 HLF 0.976 - - - - 0.976 -

Mlig455_008456 {REF} {Length: 2202} {Pfam: Basic region leucine zipper [PF07716.17, score=48.4]; bZIP transcription factor [PF00170.23, score=23.8]} {Human: ENSG00000108924, HLF, HLF, PAR bZIP transcription factor, [RH, Score=85.5, Expect=2e-18]} {Mouse: ENSMUSG00000003949, Hlf, hepatic leukemia factor, [RH, Score=85.5, Expect=1e-18]} {Dmel: FBgn0034096, CG7786, [Score=95.9, Expect=2e-23]} {Celegans: WBGene00000469, ces-2, Cell death specification protein 2, [RH, Score=77.8, Expect=9e-17]} {Smed: dd_Smed_v6_14028_0_1, dd_Smed_v6_14028_0_1, [RH, Score=70.9, Expect=9e-15]} {RNA1509_55988} {RNA1310_15764.1} {RNA815_6404.1}

Mlig455_008497 {REF} {Length: 274} {NoTransDecoderORF}

Mlig455_008498 {REF} {Length: 2707} {Pfam: Basic region leucine zipper [PF07716.17, score=48.4]; bZIP transcription factor [PF00170.23, score=23.8]} {Human: ENSG00000108924, HLF, HLF, PAR bZIP transcription factor, [RH, Score=85.5, Expect=2e-18]} {Mouse: ENSMUSG00000003949, Hlf, hepatic leukemia factor, [RH, Score=85.5, Expect=1e-18]} {Dmel: FBgn0034096, CG7786, [Score=95.9, Expect=2e-23]} {Celegans: WBGene00000469, ces-2, Cell death specification protein 2, [RH, Score=77.8, Expect=9e-17]} {Smed: dd_Smed_v6_14028_0_1, dd_Smed_v6_14028_0_1, [RH, Score=70.9, Expect=9e-15]} {RNA1509_55988} {RNA1310_15764.1} {RNA815_6404.1}

Mlig455_015305 {REF} {Length: 3704} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=62.3]} {Smed: dd_Smed_v6_1574_6_40, dd_Smed_v6_1574_6_40, [Score=175, Expect=8e-46]} {RNA1310_27350} {RNA815_49943}
4. MligTC455_07292 10 0.21 Mlig455_019783

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_019783 {REF} {Length: 802} {RNA1509_2412} {RNA1310_111387} {RNA815_16323}
5. MligTC455_49299 241 5.02 Mlig455_031681

Neo: -

Age: -

 CORO7-PAM16 0.969 - - - - 0.969 - Mlig455_031681 {REF} {Length: 5554} {TRANSSPLICED} {Pfam: Type of WD40 repeat [PF16300.7, score=83.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.3]; Domain of unknown function (DUF1899) [PF08953.13, score=21.9]} {Human: ENSG00000103426, CORO7-PAM16, CORO7-PAM16 readthrough, [RH, Score=218, Expect=7e-58]; ENSG00000262246, CORO7, coronin 7, [RH, Score=218, Expect=3e-58]; ENSG00000278760, CORO7-PAM16, CORO7-PAM16 readthrough, [RH, Score=218, Expect=7e-58]; ENSG00000282725, CORO7, coronin 7, [RH, Score=218, Expect=3e-58]} {Mouse: ENSMUSG00000039637, Coro7, coronin 7, [RH, Score=198, Expect=7e-52]} {Dmel: FBgn0029903, pod1, [Score=165, Expect=3e-41]} {Celegans: WBGene00004075, pod-1, POD-1, [Score=104, Expect=1e-22]} {Smed: dd_Smed_v6_448_0_1, dd_Smed_v6_448_0_1, [Score=72.8, Expect=5e-13]} {RNA1509_15841} {RNA1310_4360, RNA1509_15841} {RNA1509_15841, RNA815_17986}
6. MligTC455_19234 144 3.01 Mlig455_013422

Neo: -

Age: -

 PCDH1 0.96 - - - - 0.960 - Mlig455_013422 {REF} {Length: 5999} {Pfam: Cadherin domain [PF00028.19, score=190.7]; Cadherin-like [PF16184.7, score=28.6]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=218, Expect=2e-57]; ENSG00000184226, PCDH9, protocadherin 9, [Score=211, Expect=6e-55]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=224, Expect=7e-60]} {Dmel: FBgn0024836, stan, starry night, [Score=172, Expect=8e-43]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=147, Expect=3e-35]} {Smed: dd_Smed_v6_21207_0_1, dd_Smed_v6_21207_0_1, [Score=290, Expect=8e-82]} {RNA1509_34166} {RNA1310_7773} {RNA815_31630}
7. MligTC455_12989 71 1.48 Mlig455_069277

Neo: Irradiation

Age: logFC(26M/2M)=0.362

 MNAT1 0.958 - - - - 0.958 - Mlig455_069277 {REF} {Length: 2013} {TRANSSPLICED} {Pfam: CDK-activating kinase assembly factor MAT1 [PF06391.15, score=127.4]; Zinc finger, C3HC4 type (RING finger) [PF17121.7, score=51.1]; zinc-RING finger domain [PF14634.8, score=24.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=24.0]; Zinc-binding RING-finger [PF14569.8, score=22.6]; RING-type zinc-finger [PF13445.8, score=22.2]; P-11 zinc finger [PF03854.16, score=21.2]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=19.3]; Prokaryotic RING finger family 4 [PF14447.8, score=19.3]; RING/Ubox like zinc-binding domain [PF14570.8, score=18.7]} {Human: ENSG00000020426, MNAT1, MNAT1, CDK activating kinase assembly factor, [RH, Score=191, Expect=6e-59]} {Mouse: ENSMUSG00000021103, Mnat1, menage a trois 1, [RH, Score=197, Expect=3e-61]} {Dmel: FBgn0024956, Mat1, Menage a trois 1, [RH, Score=198, Expect=1e-61]} {Celegans: WBGene00018769, mnat-1, MNAT (Menage a trois) TFIIH subunit, [RH, Score=151, Expect=1e-43]} {Smed: dd_Smed_v6_5889_0_2, dd_Smed_v6_5889_0_2, [RH, Score=94.7, Expect=1e-22]} {RNA1509_33739} {RNA1310_33720.1, RNA1509_33739} {RNA1509_33739, RNA815_35140}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA