M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08515

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08515 13 0.28 Mlig455_061939

Neo: -

Age: -

 Mlig455_061939 {REF} {Length: 903} {NoTransDecoderORF} {RNA1310_86394} {RNA815_45557}

Cumulative graph for MligTC455_08515

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.436 0.6 1.00000 1.00000
RegionR2 -0.286 0.6 1.00000 1.00000
RegionR3 0.393 0.6 1.00000 1.00000
RegionR4 1.178 0.6 0.99950 1.00000
RegionR5 0.896 0.6 1.00000 1.00000
RegionR6 0.61 0.6 1.00000 1.00000
RegionR7 -0.399 0.6 0.99982 1.00000
RegionR8 -0.957 0.6 0.99975 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.994 0.6 1.00000 1.00000
RegenerationR2 2.748 0.6 0.39879 0.81413
RegenerationR3 0.418 0.6 1.00000 1.00000
RegenerationR4 1.874 0.6 0.68793 0.94832
RegenerationR5 1.994 0.6 0.53176 0.87586
RegenerationR6 3.275 0.6 0.50918 0.81284
RegenerationBL -0.173 0.6 1.00000 1.00000
RegenerationTP 2.352 0.6 0.72475 1.00000


Genes with expression patterns similar to MligTC455_08515

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08515 13 0.28 Mlig455_061939

Neo: -

Age: -

 2 - - - 1.000 - 1.000 Mlig455_061939 {REF} {Length: 903} {NoTransDecoderORF} {RNA1310_86394} {RNA815_45557}
2. MligTC455_09864 83 1.72 Mlig455_018074

Neo: -

Age: -

 0.986 - - - 0.986 - - Mlig455_018074 {REF} {Length: 1002} {RNA1310_103372}
3. MligTC455_36724 29 0.6 Mlig455_036028, Mlig455_056619

Neo: -

Age: -

 MEIS2 0.974 - - - 0.974 - -

Mlig455_036028 {REF} {Length: 2707} {Pfam: Homeobox KN domain [PF05920.13, score=62.8]; Homeodomain [PF00046.31, score=33.6]} {Human: ENSG00000134138, MEIS2, Meis homeobox 2, [Score=73.9, Expect=1e-13]; ENSG00000105419, MEIS3, Meis homeobox 3, [Score=73.6, Expect=2e-13]; ENSG00000143995, MEIS1, Meis homeobox 1, [Score=72.0, Expect=6e-13]} {Mouse: ENSMUSG00000027210, Meis2, Meis homeobox 2, [Score=73.9, Expect=1e-13]; ENSMUSG00000041420, Meis3, Meis homeobox 3, [Score=73.6, Expect=1e-13]; ENSMUSG00000020160, Meis1, Meis homeobox 1, [Score=72.4, Expect=4e-13]} {Dmel: FBgn0001235, hth, homothorax, [Score=73.2, Expect=2e-13]} {Celegans: WBGene00006796, unc-62, Homeobox protein unc-62, [Score=74.3, Expect=6e-14]} {Smed: dd_Smed_v6_7863_0_1, dd_Smed_v6_7863_0_1, [RH, Score=100, Expect=3e-22]} {RNA1509_22023} {RNA1310_68231} {RNA815_37254}

Mlig455_056619 {REF} {Length: 1580} {Pfam: RNase H [PF00075.26, score=48.8]} {RNA1310_68388} {RNA815_16034.1}
4. MligTC455_21597 35 0.72 Mlig455_019890

Neo: Germline

Age: -

 0.971 - - - 0.971 - - Mlig455_019890 {REF} {Length: 744} {NoTransDecoderORF} {RNA1310_5686} {RNA815_28184}
5. MligTC455_01516 42 0.88 Mlig455_019862

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_019862 {REF} {Length: 694} {NoTransDecoderORF}
6. MligTC455_22332 78 1.63 Mlig455_053136

Neo: -

Age: Down-Up-Down

 TRPM3 0.963 - - - - - 0.963 Mlig455_053136 {REF} {Length: 4117} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=64.1]; Ankyrin repeats (many copies) [PF13857.8, score=63.6]; Ion transport protein [PF00520.33, score=52.0]; Ankyrin repeats (many copies) [PF13637.8, score=51.6]; Ankyrin repeat [PF13606.8, score=41.3]; Ankyrin repeat [PF00023.32, score=36.5]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=131, Expect=3e-30]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=132, Expect=1e-30]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=82.0, Expect=3e-15]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=71.6, Expect=3e-12]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=249, Expect=2e-68]} {RNA1509_4234} {RNA1310_2153, RNA1509_4234} {RNA1509_4234, RNA815_602}
7. MligTC455_04889 135 2.82 Mlig455_015062, Mlig455_027143

Neo: -

Age: -

 ENPP2, ENPP6 0.957 - - - 0.957 - -

Mlig455_015062 {REF} {Length: 850} {TRANSSPLICED} {Pfam: Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=81.7]} {Human: ENSG00000136960, ENPP2, ectonucleotide pyrophosphatase/phosphodiesterase 2, [Score=77.0, Expect=5e-16]} {Mouse: ENSMUSG00000038173, Enpp6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=75.5, Expect=2e-16]; ENSMUSG00000022425, Enpp2, ectonucleotide pyrophosphatase/phosphodiesterase 2, [Score=75.1, Expect=1e-15]} {Celegans: WBGene00007753, C27A7.1, Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1, [Score=65.9, Expect=1e-12]} {Smed: dd_Smed_v6_1269_0_1, dd_Smed_v6_1269_0_1, [Score=117, Expect=5e-31]} {RNA1509_26890} {RNA1310_15252} {RNA815_20232}

Mlig455_027143 {REF} {Length: 4109} {TRANSSPLICED} {Pfam: Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=125.6]} {Human: ENSG00000164303, ENPP6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=167, Expect=1e-45]} {Mouse: ENSMUSG00000038173, Enpp6, ectonucleotide pyrophosphatase/phosphodiesterase 6, [Score=168, Expect=4e-46]} {Celegans: WBGene00007753, C27A7.1, Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1, [Score=80.5, Expect=1e-15]} {Smed: dd_Smed_v6_1269_0_1, dd_Smed_v6_1269_0_1, [RH, Score=218, Expect=2e-65]} {RNA1509_44891, RNA1509_53042} {RNA1310_16164.1, RNA1509_44891} {RNA1509_44891, RNA815_10561}
8. MligTC455_34974 179 3.74 Mlig455_065975

Neo: Irradiation

Age: -

 UCKL1 0.953 - - - 0.953 - - Mlig455_065975 {REF} {Length: 2874} {TRANSSPLICED} {Pfam: Uracil phosphoribosyltransferase [PF14681.8, score=201.0]; Phosphoribulokinase / Uridine kinase family [PF00485.20, score=186.5]; AAA domain [PF13238.8, score=25.0]; AAA domain [PF13671.8, score=22.7]; Chloramphenicol phosphotransferase-like protein [PF07931.14, score=20.1]} {Human: ENSG00000198276, UCKL1, uridine-cytidine kinase 1 like 1, [Score=525, Expect=0.0]} {Mouse: ENSMUSG00000089917, Uckl1, uridine-cytidine kinase 1-like 1, [Score=524, Expect=0.0]} {Dmel: FBgn0022029, l(2)k01209, lethal (2) k01209, [Score=507, Expect=1e-175]} {Celegans: WBGene00008948, F19B6.1, Uridine kinase, [RH, Score=493, Expect=3e-170]} {Smed: dd_Smed_v6_2901_0_1, dd_Smed_v6_2901_0_1, [Score=507, Expect=1e-176]} {RNA1509_17109, RNA1509_51186} {RNA1310_13278, RNA1509_17109, RNA1509_51186} {RNA1509_17109, RNA1509_51186, RNA815_5837}
9. MligTC455_53914 97 2.02 Mlig455_020662, Mlig455_059249

Neo: -

Age: -

 TBX20 0.953 - - - 0.953 - -

Mlig455_020662 {REF} {Length: 2507} {Pfam: T-box [PF00907.24, score=250.5]} {Human: ENSG00000164532, TBX20, T-box 20, [RH, Score=325, Expect=2e-104]} {Mouse: ENSMUSG00000031965, Tbx20, T-box 20, [RH, Score=325, Expect=5e-105]} {Dmel: FBgn0016660, H15, [RH, Score=289, Expect=1e-88]} {Celegans: WBGene00003106, mab-9, T-box protein 12, [RH, Score=246, Expect=3e-76]} {Smed: dd_Smed_v6_19890_0_1, dd_Smed_v6_19890_0_1, [RH, Score=313, Expect=6e-99]} {RNA1310_57624} {RNA815_41964}

Mlig455_059249 {REF} {Length: 2488} {Pfam: T-box [PF00907.24, score=250.6]} {Human: ENSG00000164532, TBX20, T-box 20, [RH, Score=325, Expect=2e-104]} {Mouse: ENSMUSG00000031965, Tbx20, T-box 20, [RH, Score=325, Expect=6e-105]} {Dmel: FBgn0261963, mid, midline, [RH, Score=303, Expect=7e-95]} {Celegans: WBGene00003106, mab-9, T-box protein 12, [RH, Score=244, Expect=3e-75]} {Smed: dd_Smed_v6_19890_0_1, dd_Smed_v6_19890_0_1, [RH, Score=313, Expect=7e-99]} {RNA1310_57624} {RNA815_41964}
10. MligTC455_39517 11 0.24 Mlig455_031399

Neo: -

Age: -

 HTR3A 0.952 - - - - - 0.952 Mlig455_031399 {REF} {Length: 4644} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=135.0]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=109.0]; Integral membrane protein (intg_mem_TP0381) [PF09529.12, score=18.5]; CDC45-like protein [PF02724.16, score=17.4]} {Human: ENSG00000166736, HTR3A, 5-hydroxytryptamine receptor 3A, [Score=121, Expect=1e-28]} {Mouse: ENSMUSG00000032269, Htr3a, 5-hydroxytryptamine (serotonin) receptor 3A, [Score=130, Expect=8e-32]} {Dmel: FBgn0028875, nAChRalpha5, nicotinic Acetylcholine Receptor alpha5, [Score=103, Expect=1e-22]} {Celegans: WBGene00000048, acr-9, AcetylCholine Receptor, [Score=115, Expect=9e-27]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=114, Expect=2e-26]} {RNA1509_53098} {RNA1310_67430} {RNA815_23438}
11. MligTC455_43723 119 2.48 Mlig455_063421

Neo: -

Age: logFC(26M/2M)=0.746

 0.952 - - - 0.952 - - Mlig455_063421 {REF} {Length: 965} {NoTransDecoderORF} {RNA1509_18795, RNA1509_40721} {RNA1310_43399, RNA1509_40721} {RNA1509_40721, RNA815_29113.1}
12. MligTC455_02400 23 0.48 Mlig455_023463

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_023463 {REF} {Length: 1638} {RNA1509_45548} {RNA1310_99427} {RNA815_60916}
13. MligTC455_11587 38 0.8 Mlig455_051295

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_051295 {REF} {Length: 1957} {RNA1509_59554} {RNA1310_79708} {RNA815_9685.1}
14. MligTC455_19424 49 1.02 Mlig455_022599

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_022599 {REF} {Length: 1327} {NoTransDecoderORF} {RNA1509_17743} {RNA1310_67838} {RNA815_53186}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA