M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08531

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08531 27 0.57 Mlig455_029566

Neo: -

Age: -

 Mlig455_029566 {REF} {Length: 1036} {RNA1310_41426} {RNA815_34740}

Cumulative graph for MligTC455_08531

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.779 1.085 0.99978 1.00000
RegionR2 1.941 1.085 0.28285 0.66939
RegionR3 1.387 1.085 0.36748 0.90253
RegionR4 0.455 1.085 0.65261 0.95468
RegionR5 0.604 1.085 0.59988 0.95723
RegionR6 0.602 1.085 0.61609 1.00000
RegionR7 1.643 1.085 0.35188 0.98746
RegionR8 -2.853 1.085 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.203 1.085 0.99997 1.00000
RegenerationR2 -0.406 1.085 0.61681 0.92230
RegenerationR3 -0.834 1.085 0.54354 0.87979
RegenerationR4 0.657 1.085 0.54409 0.88987
RegenerationR5 0.012 1.085 0.93364 1.00000
RegenerationR6 0.532 1.085 0.65101 0.89906
RegenerationBL -2.809 1.085 0.99960 1.00000
RegenerationTP -2.143 1.085 0.99969 1.00000


Genes with expression patterns similar to MligTC455_08531

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08531 27 0.57 Mlig455_029566

Neo: -

Age: -

 3 - - 1.000 - 1.000 1.000 Mlig455_029566 {REF} {Length: 1036} {RNA1310_41426} {RNA815_34740}
2. MligTC455_08532 28 0.59 Mlig455_040448

Neo: -

Age: -

 2.993 - - 1.000 - 0.998 0.995 Mlig455_040448 {REF} {Length: 1421} {RNA1310_41426} {RNA815_34740}
3. MligTC455_32643 14 0.28 Mlig455_043702

Neo: -

Age: -

 1.662 - - 0.707 - 0.955 - Mlig455_043702 {REF} {Length: 970} {Pfam: PAN domain [PF00024.28, score=19.3]} {Smed: dd_Smed_v6_42798_0_1, dd_Smed_v6_42798_0_1, [Score=64.7, Expect=1e-12]} {RNA1509_35604} {RNA1310_57814} {RNA815_29718}
4. MligTC455_00181 6 0.13 Mlig455_042885

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_042885 {REF} {Length: 166} {NoTransDecoderORF} {RNA1509_22223} {RNA1310_68915} {RNA815_1171.2}
5. MligTC455_46859 34 0.71 Mlig455_050646

Neo: -

Age: Down-Up-Down

 TJP2 0.973 - - - - 0.973 - Mlig455_050646 {REF} {Length: 4298} {Pfam: PDZ domain [PF00595.26, score=44.7]; Guanylate kinase [PF00625.23, score=36.5]; PDZ domain [PF17820.3, score=28.7]; PDZ domain [PF13180.8, score=20.6]} {Human: ENSG00000119139, TJP2, tight junction protein 2, [RH, Score=189, Expect=3e-51]; ENSG00000285130, AL358113.1, tight junction protein 2, [RH, Score=187, Expect=3e-49]; ENSG00000277401, TJP1, tight junction protein 1, [RH, Score=187, Expect=2e-49]; ENSG00000104067, TJP1, tight junction protein 1, [RH, Score=187, Expect=2e-49]} {Mouse: ENSMUSG00000030516, Tjp1, tight junction protein 1, [RH, Score=189, Expect=4e-50]; ENSMUSG00000024812, Tjp2, tight junction protein 2, [RH, Score=187, Expect=1e-49]} {Dmel: FBgn0262614, pyd, polychaetoid, [Score=209, Expect=6e-57]} {Celegans: WBGene00013683, zoo-1, ZO-1 (Zonula Occludens tight junctional protein) Ortholog, [RH, Score=177, Expect=2e-46]} {Smed: dd_Smed_v6_7374_0_1, dd_Smed_v6_7374_0_1, [Score=54.3, Expect=2e-07]} {RNA1509_35829} {RNA1310_1784, RNA1509_35829} {RNA1509_35829, RNA815_1919}
6. MligTC455_18278 23 0.48 Mlig455_032342

Neo: -

Age: Down-Up-Down

 0.971 - - - - - 0.971 Mlig455_032342 {REF} {Length: 2499} {RNA1310_12031} {RNA815_8717.1}
7. MligTC455_10249 19 0.41 Mlig455_012726

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_012726 {REF} {Length: 892} {NoTransDecoderORF} {RNA1509_2860} {RNA1310_58348} {RNA815_55323}
8. MligTC455_11978 125 2.6 Mlig455_025347, Mlig455_025403, Mlig455_040335, Mlig455_055958

Neo: -

Age: Down-Up-Down

Regeneration-upregulated R2: 4.813

Regeneration-enriched R2: 4.813

 0.966 - - - - 0.966 -

Mlig455_025347 {REF} {Length: 1275} {TRANSSPLICED} {RNA1509_29097} {RNA1310_7101.2} {RNA815_7291.1}

Mlig455_025403 {REF} {Length: 1694} {TRANSSPLICED} {RNA1509_29097} {RNA1310_7101.2} {RNA815_7291.1}

Mlig455_040335 {REF} {Length: 1691} {TRANSSPLICED} {RNA1509_29097} {RNA1310_7101.2} {RNA815_7291.1}

Mlig455_055958 {REF} {Length: 1538} {TRANSSPLICED} {RNA1509_29097} {RNA1310_7101.2} {RNA815_7291.1}
9. MligTC455_50518 10 0.21 Mlig455_030197

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_030197 {REF} {Length: 3644} {Pfam: Integrase core domain [PF00665.28, score=48.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=27.5]; Aspartyl protease [PF13650.8, score=25.1]; Retroviral aspartyl protease [PF00077.22, score=20.5]; Integrase core domain [PF13683.8, score=20.4]; Domain of unknown function (DUF4537) [PF15057.8, score=20.4]} {Celegans: WBGene00019335, K02F6.1, [Score=49.7, Expect=1e-05]} {Smed: dd_Smed_v6_3718_0_1, dd_Smed_v6_3718_0_1, [Score=81.3, Expect=5e-16]} {RNA1509_37281} {RNA1310_6533.1} {RNA815_14259}
10. MligTC455_45946 8 0.17 Mlig455_028969

Neo: -

Age: -

 NPR1 0.961 - - - - 0.961 - Mlig455_028969 {REF} {Length: 2315} {Pfam: Receptor family ligand binding region [PF01094.30, score=121.9]} {Human: ENSG00000169418, NPR1, natriuretic peptide receptor 1, [Score=174, Expect=1e-45]} {Mouse: ENSMUSG00000027931, Npr1, natriuretic peptide receptor 1, [Score=152, Expect=9e-39]} {Dmel: FBgn0051183, CG31183, [Score=176, Expect=2e-46]} {Celegans: WBGene00020131, gcy-28, Receptor-type guanylate cyclase gcy-28, [Score=186, Expect=3e-50]} {Smed: dd_Smed_v6_14331_0_1, dd_Smed_v6_14331_0_1, [Score=211, Expect=1e-58]} {RNA1310_5627} {RNA815_1811}
11. MligTC455_27647 22 0.46 Mlig455_018403

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_018403 {REF} {Length: 496} {NoTransDecoderORF} {RNA1509_41197} {RNA1310_12293.2} {RNA815_20019}
12. MligTC455_19316 221 4.6 Mlig455_050415

Neo: Irradiation

Age: -

 ZNF626 0.958 - - - - 0.958 - Mlig455_050415 {REF} {Length: 3403} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=68.5]; Zinc-finger double domain [PF13465.8, score=68.0]; C2H2-type zinc finger [PF13894.8, score=56.1]; C2H2-type zinc finger [PF13912.8, score=36.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=26.1]; Zinc ribbon domain [PF09723.12, score=25.6]; Transposase zinc-ribbon domain [PF12760.9, score=22.3]; Zic proteins zinc finger domain [PF18366.3, score=19.2]} {Human: ENSG00000188171, ZNF626, zinc finger protein 626, [Score=122, Expect=9e-30]} {Mouse: ENSMUSG00000092416, Zfp141, zinc finger protein 141, [Score=112, Expect=4e-26]; ENSMUSG00000074863, Platr25, pluripotency associated transcript 25, [Score=110, Expect=8e-26]; ENSMUSG00000054715, Zscan22, zinc finger and SCAN domain containing 22, [Score=110, Expect=9e-26]; ENSMUSG00000091183, Gm5141, predicted gene 5141, [Score=108, Expect=5e-25]; ENSMUSG00000069476, Zfp616, zinc finger protein 616, [Score=108, Expect=1e-24]; ENSMUSG00000047603, Zfp235, zinc finger protein 235, [Score=107, Expect=1e-24]; ENSMUSG00000030757, Zkscan2, zinc finger with KRAB and SCAN domains 2, [Score=107, Expect=3e-24]; ENSMUSG00000045639, Zfp629, zinc finger protein 629, [Score=107, Expect=3e-24]} {Dmel: FBgn0004618, gl, glass, [Score=112, Expect=2e-26]} {Celegans: WBGene00000483, che-1, Transcription factor che-1, [Score=97.8, Expect=2e-23]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [Score=99.4, Expect=5e-23]} {RNA1509_16295, RNA1509_53463} {RNA1310_10064, RNA1509_16295, RNA1509_53463} {RNA1509_16295, RNA1509_53463, RNA815_10615}
13. MligTC455_33871 57 1.2 Mlig455_026131, Mlig455_026203

Neo: -

Age: -

 P2RX4 0.956 - - - - 0.956 -

Mlig455_026131 {REF} {Length: 534} {NoTransDecoderORF} {RNA1310_145408}

Mlig455_026203 {REF} {Length: 6630} {Pfam: ATP P2X receptor [PF00864.21, score=438.9]} {Human: ENSG00000135124, P2RX4, purinergic receptor P2X 4, [Score=332, Expect=3e-105]} {Mouse: ENSMUSG00000029470, P2rx4, purinergic receptor P2X, ligand-gated ion channel 4, [Score=316, Expect=3e-99]} {Smed: dd_Smed_v6_10968_0_1, dd_Smed_v6_10968_0_1, [RH, Score=431, Expect=3e-142]} {RNA1509_22651} {RNA1310_622.1} {RNA815_2514.1}
14. MligTC455_32642 14 0.28 Mlig455_026288

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_026288 {REF} {Length: 962} {Smed: dd_Smed_v6_42798_0_1, dd_Smed_v6_42798_0_1, [Score=52.4, Expect=4e-09]} {RNA1509_35604} {RNA1310_57814} {RNA815_29718}
15. MligTC455_09645 4 0.09 Mlig455_049831

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_049831 {REF} {Length: 357} {NoTransDecoderORF} {RNA1509_16732} {RNA1310_7776} {RNA815_5850}
16. MligTC455_22667 17 0.36 Mlig455_009254

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_009254 {REF} {Length: 1463} {RNA1509_57504} {RNA1310_52420} {RNA815_32601}
17. MligTC455_46194 281 5.86 Mlig455_038867

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 2.707

Region-enriched R4: 2.107/0.01387

 FBXO33 0.953 - - - - 0.953 - Mlig455_038867 {REF} {Length: 3995} {Pfam: F-box-like [PF12937.9, score=24.1]} {Human: ENSG00000165355, FBXO33, F-box protein 33, [RH, Score=73.6, Expect=3e-13]} {Mouse: ENSMUSG00000035329, Fbxo33, F-box protein 33, [RH, Score=70.1, Expect=2e-12]} {Dmel: FBgn0035959, CG4911, [RH, Score=123, Expect=1e-30]} {RNA1509_34211, RNA1509_49549, RNA1509_54797} {RNA1310_15576, RNA1509_34211, RNA1509_49549, RNA1509_54797} {RNA1509_34211, RNA1509_49549, RNA1509_54797, RNA815_6250.1}
18. MligTC455_06229 40 0.84 Mlig455_033335

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_033335 {REF} {Length: 417} {RNA1310_7406.2} {RNA815_27098.2}
19. MligTC455_17467 61 1.26 Mlig455_027717, Mlig455_047775

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_027717 {REF} {Length: 2355} {RNA1509_18336} {RNA1310_64274} {RNA815_36598}

Mlig455_047775 {REF} {Length: 2352} {RNA1509_18336} {RNA1310_64274} {RNA815_36598}
20. MligTC455_28400 91 1.9 Mlig455_023643

Neo: -

Age: Down-Up-Down

 0.952 - - 0.952 - - - Mlig455_023643 {REF} {Length: 1957} {TRANSSPLICED} {Pfam: Ctr copper transporter family [PF04145.17, score=30.8]} {Dmel: FBgn0062413, Ctr1A, Copper transporter 1A, [Score=45.4, Expect=5e-06]} {RNA1509_2913} {RNA1310_42494} {RNA815_39416}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA