M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08631

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08631 7 0.15 Mlig455_031515

Neo: -

Age: -

 Mlig455_031515 {REF} {Length: 667} {NoTransDecoderORF} {RNA1509_32418} {RNA1310_33089.1} {RNA815_25651.2}

Cumulative graph for MligTC455_08631

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_08631

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08631 7 0.15 Mlig455_031515

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_031515 {REF} {Length: 667} {NoTransDecoderORF} {RNA1509_32418} {RNA1310_33089.1} {RNA815_25651.2}
2. MligTC455_08101 15 0.31 Mlig455_068176

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_068176 {REF} {Length: 905} {Celegans: WBGene00015646, mlt-10, [Score=161, Expect=7e-45]} {RNA1310_116568}
3. MligTC455_10139 49 1.02 Mlig455_045741

Neo: Germline

Age: -

 0.99 - - - - 0.990 - Mlig455_045741 {REF} {Length: 2117} {RNA1509_6409} {RNA1310_36666} {RNA815_7594.1}
4. MligTC455_57317 8 0.16 Mlig455_059453

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_059453 {REF} {Length: 172} {NoTransDecoderORF} {RNA1509_41274} {RNA1310_71328} {RNA815_3008.1}
5. MligTC455_01584 7 0.15 Mlig455_038696

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_038696 {REF} {Length: 866} {Pfam: Chlorosome envelope protein C [PF11098.10, score=32.4]; Laminin Domain II [PF06009.14, score=30.4]; Methyl-accepting chemotaxis protein (MCP) signalling domain [PF00015.23, score=24.9]; Protein of unknown function (DUF1664) [PF07889.14, score=23.7]; Uncharacterized ArCR, COG1888 [PF02680.16, score=22.6]}
6. MligTC455_46214 180 3.76 Mlig455_066035

Neo: Irradiation

Age: Up-Down-Down

Region-specific R4: 6.362

Region-enriched R4: 4.758/0.00000

Regeneration-downregulated R4: -3.150

Regeneration-depleted R4: -3.150

 0.973 - - - - 0.973 - Mlig455_066035 {REF} {Length: 620} {NoTransDecoderORF} {RNA1509_46862} {RNA1310_8343} {RNA815_6233}
7. MligTC455_32616 69 1.45 Mlig455_009034, Mlig455_047067, Mlig455_054638, Mlig455_057647

Neo: -

Age: -

 ZCCHC7 0.967 - - - - 0.967 -

Mlig455_009034 {REF} {Length: 5823} {TRANSSPLICED} {Human: ENSG00000147905, ZCCHC7, zinc finger CCHC-type containing 7, [RH, Score=70.5, Expect=9e-12]} {Mouse: ENSMUSG00000035649, Zcchc7, zinc finger, CCHC domain containing 7, [RH, Score=72.8, Expect=1e-12]} {Dmel: FBgn0036668, Zcchc7, Zinc finger CCHC-type containing 7, [Score=73.9, Expect=6e-13]} {Smed: dd_Smed_v6_13094_0_1, dd_Smed_v6_13094_0_1, [RH, Score=116, Expect=1e-26]} {RNA1509_13002, RNA1509_39679} {RNA1310_7329, RNA1509_39679} {RNA1509_39679, RNA815_2068}

Mlig455_047067 {REF} {Length: 2342} {RNA1509_31392} {RNA1310_11109} {RNA815_4621}

Mlig455_054638 {REF} {Length: 2041} {RNA1509_31392} {RNA1310_11109} {RNA815_4621}

Mlig455_057647 {REF} {Length: 750} {Human: ENSG00000147905, ZCCHC7, zinc finger CCHC-type containing 7, [RH, Score=70.5, Expect=9e-12]} {Mouse: ENSMUSG00000035649, Zcchc7, zinc finger, CCHC domain containing 7, [RH, Score=72.8, Expect=1e-12]} {Dmel: FBgn0036668, Zcchc7, Zinc finger CCHC-type containing 7, [Score=73.9, Expect=6e-13]} {Smed: dd_Smed_v6_13094_0_1, dd_Smed_v6_13094_0_1, [RH, Score=116, Expect=1e-26]} {RNA1509_31392} {RNA1310_11109} {RNA815_4621}
8. MligTC455_34040 14 0.3 Mlig455_004364

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.318

 0.966 - - - - 0.966 - Mlig455_004364 {REF} {Length: 2363} {RNA1509_1097, RNA1509_21186} {RNA1310_10114.1, RNA1509_21186} {RNA1509_21186, RNA815_3296}
9. MligTC455_03736 10 0.2 Mlig455_025582

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_025582 {REF} {Length: 752} {NoTransDecoderORF} {RNA1509_41841} {RNA1310_70701} {RNA815_61492}
10. MligTC455_08632 8 0.16 Mlig455_031518

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_031518 {REF} {Length: 595} {NoTransDecoderORF} {RNA1509_32418} {RNA1310_33089.1} {RNA815_25651.2}
11. MligTC455_26614 9 0.19 Mlig455_028989, Mlig455_038746

Neo: -

Age: -

 RTL1, STK17A 0.961 - - - - 0.961 -

Mlig455_028989 {REF} {Length: 1779} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=105.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=87.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=82.5]; Integrase zinc binding domain [PF17921.3, score=51.1]; H2C2 zinc finger [PF09337.12, score=22.0]; Integrase core domain [PF00665.28, score=20.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=94.0, Expect=3e-19]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=232, Expect=6e-66]} {RNA1509_24311} {RNA1310_40780} {RNA815_49943}

Mlig455_038746 {REF} {Length: 3497} {Pfam: Protein kinase domain [PF00069.27, score=103.4]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=91.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=86.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=50.5]; Integrase core domain [PF00665.28, score=43.9]; Integrase zinc binding domain [PF17921.3, score=27.6]} {Human: ENSG00000164543, STK17A, serine/threonine kinase 17a, [Score=108, Expect=3e-24]} {Mouse: ENSMUSG00000026094, Stk17b, serine/threonine kinase 17b (apoptosis-inducing), [Score=104, Expect=2e-23]} {Dmel: FBgn0052666, Drak, Death-associated protein kinase related, [Score=110, Expect=3e-24]} {Celegans: WBGene00003400, dapk-1, Death-associated protein kinase dapk-1, [Score=103, Expect=7e-22]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=337, Expect=7e-99]} {RNA1509_24311} {RNA1310_3864} {RNA815_9443}
12. MligTC455_18927 275 5.73 Mlig455_035769

Neo: Germline

Age: -

Region-specific R4: 7.464

Region-enriched R4: 5.533/0.00007

 0.959 - - - - 0.959 - Mlig455_035769 {REF} {Length: 631} {RNA1509_17502} {RNA1310_59625} {RNA815_36809}
13. MligTC455_31763 27 0.56 Mlig455_064231

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_064231 {REF} {Length: 964} {RNA1310_47398.1} {RNA815_31782}
14. MligTC455_40895 617 12.85 Mlig455_041447, Mlig455_060898

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 5.348

 DCST1 0.959 - - - - 0.959 -

Mlig455_041447 {REF} {Length: 3999} {Pfam: DC-STAMP-like protein [PF07782.15, score=71.9]; Tetraspanin family [PF00335.22, score=26.7]} {Human: ENSG00000163357, DCST1, DC-STAMP domain containing 1, [RH, Score=75.9, Expect=3e-13]} {Mouse: ENSMUSG00000109293, Dcst2, DC-STAMP domain containing 2, [RH, Score=65.5, Expect=4e-10]} {RNA1509_4454} {RNA1310_2408} {RNA815_1564}

Mlig455_060898 {REF} {Length: 4673} {Pfam: DC-STAMP-like protein [PF07782.15, score=71.9]; Tetraspanin family [PF00335.22, score=26.7]} {Human: ENSG00000163357, DCST1, DC-STAMP domain containing 1, [RH, Score=75.9, Expect=3e-13]} {Mouse: ENSMUSG00000109293, Dcst2, DC-STAMP domain containing 2, [RH, Score=65.5, Expect=4e-10]} {RNA1509_4454} {RNA1310_2408, RNA1509_4454} {RNA1509_4454, RNA815_1564}
15. MligTC455_30800 22 0.45 Mlig455_003806, Mlig455_012638, Mlig455_012657, Mlig455_013229, Mlig455_016690, Mlig455_019587, Mlig455_021181, Mlig455_032041, Mlig455_032076, Mlig455_037467, Mlig455_039390, Mlig455_040898, Mlig455_047099, Mlig455_052620, Mlig455_052665, Mlig455_053310, Mlig455_059112, Mlig455_063183, Mlig455_065120, Mlig455_069995

Neo: -

Age: -

 0.958 - - - - 0.958 -

Mlig455_003806 {REF} {Length: 4774} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.3]; Tetratricopeptide repeat [PF07719.19, score=19.5]; Tetratricopeptide repeat [PF00515.30, score=19.0]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=59.3, Expect=4e-10]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_012638 {REF} {Length: 3145} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.5]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_012657 {REF} {Length: 2741} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=46.2]} {RNA1509_44716} {RNA1310_5710.2} {RNA815_6291.1}

Mlig455_013229 {REF} {Length: 1553} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=45.2]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_016690 {REF} {Length: 1763} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.3]; Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=33.1]} {Smed: dd_Smed_v6_11922_0_1, dd_Smed_v6_11922_0_1, [Score=78.6, Expect=1e-15]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_019587 {REF} {Length: 1922} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=122.2]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=4e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_021181 {REF} {Length: 2474} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.1]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=6e-13]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_032041 {REF} {Length: 1711} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=120.1]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=70.9, Expect=5e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_032076 {REF} {Length: 2336} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.1]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=71.2, Expect=6e-13]} {RNA1509_27849} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_037467 {REF} {Length: 1016} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=45.7]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_039390 {REF} {Length: 1897} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.9]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=70.9, Expect=6e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_040898 {REF} {Length: 1369} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=117.7]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=60.5, Expect=4e-11]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_047099 {REF} {Length: 1877} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=92.9]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=58.2, Expect=4e-10]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_052620 {REF} {Length: 1366} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.5]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_052665 {REF} {Length: 2132} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.1]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=64.3, Expect=3e-11]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_053310 {REF} {Length: 1922} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=125.4]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=71.6, Expect=3e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_059112 {REF} {Length: 1922} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.2]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=71.6, Expect=3e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}

Mlig455_063183 {REF} {Length: 3324} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.3]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=71.6, Expect=7e-13]} {RNA1509_27849} {RNA1310_5710.1, RNA1509_27849} {RNA1509_27849, RNA815_6291.1}

Mlig455_065120 {REF} {Length: 1028} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=118.5]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_069995 {REF} {Length: 1028} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=58.2]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}
16. MligTC455_08252 147 3.06 Mlig455_038032

Neo: -

Age: Up-Down-Down

Region-specific R4: 6.734

Region-enriched R4: 3.553/0.03127

 0.954 - - - - 0.954 - Mlig455_038032 {REF} {Length: 1109} {Pfam: BRCA2, oligonucleotide/oligosaccharide-binding, domain 1 [PF09103.12, score=19.9]} {RNA1509_46751} {RNA1310_85992, RNA1509_46751} {RNA1509_46751, RNA815_47973}
17. MligTC455_39442 243 5.06 Mlig455_066956

Neo: Germline

Age: -

Region-specific R4: 6.144

Region-enriched R4: 3.145/0.00006

 0.954 - - - - 0.954 - Mlig455_066956 {REF} {Length: 4885} {RNA1509_14447, RNA1509_37172, RNA1509_54039} {RNA1310_38764, RNA1509_14447, RNA1509_37172, RNA1509_54039} {RNA1509_14447, RNA1509_37172, RNA1509_54039, RNA815_8420}
18. MligTC455_26109 14 0.29 Mlig455_037009

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_037009 {REF} {Length: 2263} {RNA1509_41127} {RNA1310_28088} {RNA815_23304}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA