M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08664

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08664 12 0.24 Mlig455_038240

Neo: -

Age: -

 Mlig455_038240 {REF} {Length: 542} {NoTransDecoderORF} {RNA1509_49118} {RNA1310_31724} {RNA815_19526}

Cumulative graph for MligTC455_08664

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.022 0.618 0.99994 1.00000
RegionR2 -0.029 0.618 0.99990 1.00000
RegionR3 -1.672 0.618 0.99990 1.00000
RegionR4 2.191 0.618 0.99959 1.00000
RegionR5 -2.219 0.618 0.99992 1.00000
RegionR6 -1.727 0.618 0.99992 1.00000
RegionR7 0.685 0.618 0.99997 1.00000
RegionR8 0.747 0.618 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.325 0.618 0.99994 1.00000
RegenerationR2 1.781 0.618 0.99972 1.00000
RegenerationR3 1.945 0.618 0.99979 1.00000
RegenerationR4 -3.507 0.618 0.99964 1.00000
RegenerationR5 0.273 0.618 0.99974 1.00000
RegenerationR6 1.493 0.618 0.99984 1.00000
RegenerationBL -2.331 0.618 0.99996 1.00000
RegenerationTP -1.222 0.618 0.99996 1.00000


Genes with expression patterns similar to MligTC455_08664

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08664 12 0.24 Mlig455_038240

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_038240 {REF} {Length: 542} {NoTransDecoderORF} {RNA1509_49118} {RNA1310_31724} {RNA815_19526}
2. MligTC455_22567 154 3.2 Mlig455_006662

Neo: -

Age: Down-Up-Down

 TRPM3 0.969 - - - - 0.969 - Mlig455_006662 {REF} {Length: 5900} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=101.6]; Ankyrin repeats (3 copies) [PF12796.9, score=83.4]; Ankyrin repeats (many copies) [PF13857.8, score=57.5]; Ankyrin repeat [PF00023.32, score=54.5]; Ankyrin repeat [PF13606.8, score=53.6]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=108, Expect=6e-23]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=107, Expect=9e-23]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=107, Expect=4e-23]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=60.5, Expect=1e-08]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=118, Expect=1e-26]} {RNA1509_12598} {RNA1310_943.1, RNA1509_12598} {RNA1509_12598, RNA815_2516.1}
3. MligTC455_55942 14 0.3 Mlig455_007077

Neo: -

Age: -

Region-enriched R4: 2.980/0.03313

 0.965 - - - - 0.965 - Mlig455_007077 {REF} {Length: 422} {NoTransDecoderORF}
4. MligTC455_28078 28 0.58 Mlig455_023538

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_023538 {REF} {Length: 4451} {Pfam: Ctr copper transporter family [PF04145.17, score=22.2]} {RNA1509_23358} {RNA1310_21251.1} {RNA815_46742}
5. MligTC455_18721 85 1.77 Mlig455_044140

Neo: -

Age: -

 ANKUB1 0.956 - - - - 0.956 - Mlig455_044140 {REF} {Length: 2661} {Pfam: Ubiquitin family [PF00240.25, score=36.3]} {Human: ENSG00000206199, ANKUB1, ankyrin repeat and ubiquitin domain containing 1, [RH, Score=258, Expect=2e-77]} {Mouse: ENSMUSG00000074591, Ankub1, ankrin repeat and ubiquitin domain containing 1, [RH, Score=258, Expect=5e-78]} {Smed: dd_Smed_v6_9027_0_1, dd_Smed_v6_9027_0_1, [RH, Score=510, Expect=2e-174]} {RNA1509_23349} {RNA1310_10366.1} {RNA815_3711.1}
6. MligTC455_52708 2548 53.08 Mlig455_033971

Neo: -

Age: -

Region-specific R2: 1.697

Region-enriched R2: 1.605/0.00000

 CROCC 0.956 - - - - 0.956 - Mlig455_033971 {REF} {Length: 8201} {TRANSSPLICED} {Pfam: Ciliary rootlet component, centrosome cohesion [PF15035.8, score=206.8]; Septation ring formation regulator, EzrA [PF06160.14, score=19.8]} {Human: ENSG00000058453, CROCC, ciliary rootlet coiled-coil, rootletin, [Score=885, Expect=0.0]} {Mouse: ENSMUSG00000040860, Crocc, ciliary rootlet coiled-coil, rootletin, [Score=889, Expect=0.0]} {Dmel: FBgn0039152, Root, Rootletin, [Score=372, Expect=1e-103]} {Celegans: WBGene00022500, lfi-1, Lin-5 (Five) Interacting protein, [RH, Score=167, Expect=7e-41]} {Smed: dd_Smed_v6_1404_0_1, dd_Smed_v6_1404_0_1, [RH, Score=1909, Expect=0.0]} {RNA1509_137} {RNA1310_2877.1} {RNA815_204}
7. MligTC455_30389 116 2.41 Mlig455_029602

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_029602 {REF} {Length: 2395} {RNA1509_16871} {RNA1310_10374.1} {RNA815_9291}
8. MligTC455_34475 78 1.63 Mlig455_046323, Mlig455_068223

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_046323 {REF} {Length: 3665} {Smed: dd_Smed_v6_13778_0_1, dd_Smed_v6_13778_0_1, [RH, Score=66.6, Expect=7e-11]} {RNA1310_10926} {RNA815_30720}

Mlig455_068223 {REF} {Length: 2793} {Smed: dd_Smed_v6_13778_0_1, dd_Smed_v6_13778_0_1, [RH, Score=65.9, Expect=8e-11]} {RNA1310_10926} {RNA815_30720}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA