M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_08717

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_08717 200 4.17 Mlig455_004331

Neo: Int S/G2/M

Age: -

 IPO9 Mlig455_004331 {REF} {Length: 4852} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=26.9]; rRNA processing/ribosome biogenesis [PF08167.14, score=23.5]; Exportin 1-like protein [PF08389.14, score=19.2]} {Human: ENSG00000198700, IPO9, importin 9, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000041879, Ipo9, importin 9, [RH, Score=565, Expect=0.0]} {Dmel: FBgn0037894, Ranbp9, [RH, Score=374, Expect=1e-112]} {RNA1509_15102} {RNA1310_3940, RNA1509_15102} {RNA1509_15102, RNA815_16834}

Cumulative graph for MligTC455_08717

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.103 2.746 0.95514 1.00000
RegionR2 0.656 2.746 0.44947 0.83768
RegionR3 0.435 2.746 0.53872 1.00000
RegionR4 0.516 2.746 0.52791 0.85215
RegionR5 0.635 2.746 0.29883 0.63364
RegionR6 -0.351 2.746 0.64857 1.00000
RegionR7 -0.447 2.746 0.64860 1.00000
RegionR8 -1.341 2.746 0.32403 0.95723

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.181 2.746 0.35879 1.00000
RegenerationR2 -0.607 2.746 0.40538 0.81760
RegenerationR3 0.164 2.746 0.83089 0.99107
RegenerationR4 -0.075 2.746 0.92984 1.00000
RegenerationR5 0.087 2.746 0.90117 1.00000
RegenerationR6 0.671 2.746 0.42186 0.75254
RegenerationBL 0.799 2.746 0.44085 0.80760
RegenerationTP 1.5 2.746 0.16740 0.59921


Genes with expression patterns similar to MligTC455_08717

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_08717 200 4.17 Mlig455_004331

Neo: Int S/G2/M

Age: -

 IPO9 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_004331 {REF} {Length: 4852} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=26.9]; rRNA processing/ribosome biogenesis [PF08167.14, score=23.5]; Exportin 1-like protein [PF08389.14, score=19.2]} {Human: ENSG00000198700, IPO9, importin 9, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000041879, Ipo9, importin 9, [RH, Score=565, Expect=0.0]} {Dmel: FBgn0037894, Ranbp9, [RH, Score=374, Expect=1e-112]} {RNA1509_15102} {RNA1310_3940, RNA1509_15102} {RNA1509_15102, RNA815_16834}
2. MligTC455_08715 237 4.94 Mlig455_004262

Neo: -

Age: -

 IPO9 1.807 - - - 0.854 0.953 - Mlig455_004262 {REF} {Length: 4849} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=26.9]; rRNA processing/ribosome biogenesis [PF08167.14, score=23.5]; Exportin 1-like protein [PF08389.14, score=19.2]} {Human: ENSG00000198700, IPO9, importin 9, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000041879, Ipo9, importin 9, [RH, Score=565, Expect=0.0]} {Dmel: FBgn0037894, Ranbp9, [RH, Score=374, Expect=1e-112]} {RNA1509_15102} {RNA1310_3940} {RNA815_16834}
3. MligTC455_52830 508 10.58 Mlig455_066888

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.089/0.00951

 1.705 - - 0.731 0.974 - - Mlig455_066888 {REF} {Length: 6019} {TRANSSPLICED} {Pfam: AIMP2 lysyl-tRNA synthetase binding domain [PF16780.7, score=25.7]} {RNA1509_26768} {RNA1310_27753} {RNA815_13233.1}
4. MligTC455_44175 678 14.11 Mlig455_002973

Neo: Int S/G2/M

Age: Down-Up-Up

Region-specific R5: 3.001

Region-enriched R5: 2.682/0.00000

 AC008012.1 1.681 - - - 0.953 - 0.728 Mlig455_002973 {REF} {Length: 2788} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=88.3]; Cyclin, C-terminal domain [PF02984.21, score=21.1]} {Human: ENSG00000285901, AC008012.1, novel transcript, [RH, Score=97.8, Expect=2e-23]; ENSG00000118971, CCND2, cyclin D2, [RH, Score=96.7, Expect=8e-23]} {Mouse: ENSMUSG00000000184, Ccnd2, cyclin D2, [RH, Score=92.4, Expect=2e-21]} {Dmel: FBgn0010315, CycD, Cyclin D, [RH, Score=73.9, Expect=2e-14]} {Celegans: WBGene00000863, cya-1, G2/mitotic-specific cyclin-A1, [Score=48.9, Expect=2e-06]} {RNA1509_25341} {RNA1310_33092, RNA1509_25341} {RNA1509_25341, RNA815_15326}
5. MligTC455_44695 1109 23.11 Mlig455_050298

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.290

Region-enriched R5: 1.019/0.01420

 COQ2 0.976 - - - - - 0.976 Mlig455_050298 {REF} {Length: 1473} {TRANSSPLICED} {Pfam: UbiA prenyltransferase family [PF01040.20, score=172.3]} {Human: ENSG00000173085, COQ2, coenzyme Q2, polyprenyltransferase, [RH, Score=325, Expect=3e-108]} {Mouse: ENSMUSG00000029319, Coq2, coenzyme Q2 4-hydroxybenzoate polyprenyltransferase, [RH, Score=317, Expect=1e-105]} {Dmel: FBgn0037574, Coq2, Coenzyme Q biosynthesis protein 2, [RH, Score=322, Expect=1e-107]} {Celegans: WBGene00000762, coq-2, 4-hydroxybenzoate polyprenyltransferase, mitochondrial, [RH, Score=293, Expect=1e-96]} {Smed: dd_Smed_v6_7492_0_2, dd_Smed_v6_7492_0_2, [RH, Score=345, Expect=9e-118]} {RNA1509_29720, RNA1509_48386, RNA1509_58808} {RNA1310_22083.2, RNA1509_29720, RNA1509_48386, RNA1509_58808} {RNA1509_29720, RNA1509_48386, RNA1509_58808, RNA815_9267.1}
6. MligTC455_24916 10034 209.05 Mlig455_004424

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.381

 RPL7 0.965 - - - 0.965 - - Mlig455_004424 {REF} {Length: 1323} {TRANSSPLICED} {Pfam: Ribosomal protein L30p/L7e [PF00327.22, score=36.8]} {Human: ENSG00000147604, RPL7, ribosomal protein L7, [Score=177, Expect=4e-56]} {Mouse: ENSMUSG00000043716, Rpl7, ribosomal protein L7, [Score=176, Expect=3e-55]} {Dmel: FBgn0005593, RpL7, Ribosomal protein L7, [Score=170, Expect=5e-53]} {Celegans: WBGene00004418, rpl-7, 60S ribosomal protein L7, [Score=172, Expect=3e-54]} {Smed: dd_Smed_v6_276_0_1, dd_Smed_v6_276_0_1, [Score=168, Expect=7e-53]} {RNA1509_3743} {RNA1310_25587} {RNA815_11033.1}
7. MligTC455_24915 20103 418.81 Mlig455_004421, Mlig455_037262

Neo: -

Age: logFC(26M/2M)=0.745

 RPL7 0.964 - - - 0.964 - -

Mlig455_004421 {REF} {Length: 1326} {TRANSSPLICED} {Pfam: Ribosomal protein L30p/L7e [PF00327.22, score=70.2]; Ribosomal L30 N-terminal domain [PF08079.14, score=56.4]} {Human: ENSG00000147604, RPL7, ribosomal protein L7, [RH, Score=303, Expect=9e-104]} {Mouse: ENSMUSG00000043716, Rpl7, ribosomal protein L7, [RH, Score=302, Expect=2e-103]} {Dmel: FBgn0005593, RpL7, Ribosomal protein L7, [RH, Score=290, Expect=7e-99]} {Celegans: WBGene00004418, rpl-7, 60S ribosomal protein L7, [RH, Score=303, Expect=2e-104]} {Smed: dd_Smed_v6_276_0_1, dd_Smed_v6_276_0_1, [RH, Score=271, Expect=4e-92]} {RNA1509_24822, RNA1509_3743, RNA1509_6191} {RNA1310_25587, RNA1509_24822, RNA1509_6191} {RNA1509_24822, RNA1509_6191, RNA815_11033.1}

Mlig455_037262 {REF} {Length: 1325} {TRANSSPLICED} {Pfam: Ribosomal protein L30p/L7e [PF00327.22, score=67.5]; Ribosomal L30 N-terminal domain [PF08079.14, score=56.4]} {Human: ENSG00000147604, RPL7, ribosomal protein L7, [RH, Score=301, Expect=3e-103]} {Mouse: ENSMUSG00000043716, Rpl7, ribosomal protein L7, [RH, Score=301, Expect=5e-103]} {Dmel: FBgn0005593, RpL7, Ribosomal protein L7, [RH, Score=289, Expect=9e-99]} {Celegans: WBGene00004418, rpl-7, 60S ribosomal protein L7, [RH, Score=302, Expect=5e-104]} {Smed: dd_Smed_v6_276_0_1, dd_Smed_v6_276_0_1, [RH, Score=270, Expect=1e-91]} {RNA1509_23448, RNA1509_3743, RNA1509_527, RNA1509_55994, RNA1509_872, RNA1509_8966} {RNA1310_25587, RNA1509_23448, RNA1509_3743, RNA1509_527, RNA1509_55994, RNA1509_872, RNA1509_8966} {RNA1509_23448, RNA1509_3743, RNA1509_527, RNA1509_55994, RNA1509_872, RNA1509_8966, RNA815_11033.1}
8. MligTC455_26343 26969 561.84 Mlig455_038206, Mlig455_038280, Mlig455_042547

Neo: Neoblast

Age: -

 FKBP1B, GRID1 0.964 - - - 0.964 - -

Mlig455_038206 {REF} {Length: 851} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=117.9]} {Human: ENSG00000119782, FKBP1B, FK506 binding protein 1B, [RH, Score=152, Expect=6e-49]; ENSG00000088832, FKBP1A, FK506 binding protein 1A, [RH, Score=145, Expect=3e-46]} {Mouse: ENSMUSG00000020635, Fkbp1b, FK506 binding protein 1b, [RH, Score=148, Expect=1e-47]} {Dmel: FBgn0013954, FK506-bp2, FK506-binding protein 2, [RH, Score=150, Expect=1e-48]} {Celegans: WBGene00001427, fkb-2, Peptidylprolyl isomerase, [RH, Score=141, Expect=5e-45]} {Smed: dd_Smed_v6_894_0_1, dd_Smed_v6_894_0_1, [RH, Score=167, Expect=2e-55]} {RNA1509_34281, RNA1509_4598, RNA1509_49801, RNA1509_5022} {RNA1310_41309.1, RNA1509_34281, RNA1509_4598, RNA1509_49801, RNA1509_5022} {RNA1509_34281, RNA1509_4598, RNA1509_49801, RNA1509_5022, RNA815_13423}

Mlig455_038280 {REF} {Length: 852} {TRANSSPLICED} {Pfam: FKBP-type peptidyl-prolyl cis-trans isomerase [PF00254.30, score=117.9]} {Human: ENSG00000119782, FKBP1B, FK506 binding protein 1B, [RH, Score=152, Expect=6e-49]; ENSG00000088832, FKBP1A, FK506 binding protein 1A, [RH, Score=145, Expect=3e-46]} {Mouse: ENSMUSG00000020635, Fkbp1b, FK506 binding protein 1b, [RH, Score=148, Expect=1e-47]} {Dmel: FBgn0013954, FK506-bp2, FK506-binding protein 2, [RH, Score=150, Expect=1e-48]} {Celegans: WBGene00001427, fkb-2, Peptidylprolyl isomerase, [RH, Score=141, Expect=5e-45]} {Smed: dd_Smed_v6_894_0_1, dd_Smed_v6_894_0_1, [RH, Score=167, Expect=2e-55]} {RNA1509_1874, RNA1509_2669} {RNA1310_41309.1, RNA1509_1874, RNA1509_2669} {RNA1509_1874, RNA1509_2669, RNA815_13423}

Mlig455_042547 {REF} {Length: 3465} {Pfam: Ligand-gated ion channel [PF00060.28, score=82.2]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=47.1]; Receptor family ligand binding region [PF01094.30, score=30.4]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=20.8]} {Human: ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=145, Expect=6e-35]} {Mouse: ENSMUSG00000041078, Grid1, glutamate receptor, ionotropic, delta 1, [Score=143, Expect=2e-34]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=139, Expect=2e-33]} {Dmel: FBgn0038837, CG3822, [Score=136, Expect=1e-32]} {Celegans: WBGene00001616, glr-5, GLutamate Receptor family (AMPA), [Score=110, Expect=1e-24]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=230, Expect=1e-67]} {RNA1310_51543} {RNA815_22937}
9. MligTC455_26595 154 3.21 Mlig455_025232

Neo: -

Age: -

 APEH 0.959 - - - - - 0.959 Mlig455_025232 {REF} {Length: 2791} {TRANSSPLICED} {Pfam: Prolyl oligopeptidase family [PF00326.23, score=163.9]; Dienelactone hydrolase family [PF01738.20, score=26.9]; X-Pro dipeptidyl-peptidase (S15 family) [PF02129.20, score=23.1]; Serine aminopeptidase, S33 [PF12146.10, score=19.1]} {Human: ENSG00000164062, APEH, acylaminoacyl-peptide hydrolase, [Score=81.3, Expect=3e-15]} {Mouse: ENSMUSG00000032590, Apeh, acylpeptide hydrolase, [Score=89.0, Expect=7e-18]} {Celegans: WBGene00001057, dpf-4, Dipeptidyl Peptidase Four (IV) family, [RH, Score=367, Expect=2e-118]} {Smed: dd_Smed_v6_3723_0_1, dd_Smed_v6_3723_0_1, [RH, Score=466, Expect=1e-156]} {RNA1509_3789} {RNA1310_6314.1} {RNA815_1799}
10. MligTC455_41653 250 5.22 Mlig455_005803, Mlig455_005831

Neo: -

Age: logFC(26M/2M)=-0.376

 KCTD3 0.959 - - - - - 0.959

Mlig455_005803 {REF} {Length: 2933} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF02214.24, score=79.9]} {Human: ENSG00000136636, KCTD3, potassium channel tetramerization domain containing 3, [RH, Score=514, Expect=3e-173]} {Mouse: ENSMUSG00000026608, Kctd3, potassium channel tetramerisation domain containing 3, [RH, Score=513, Expect=1e-172]} {Dmel: FBgn0037758, CG9467, [RH, Score=363, Expect=8e-116]} {Celegans: WBGene00020721, T23B12.6, [RH, Score=365, Expect=2e-117]} {Smed: dd_Smed_v6_3856_0_1, dd_Smed_v6_3856_0_1, [RH, Score=265, Expect=2e-78]} {RNA1509_47253} {RNA1310_12536} {RNA815_15392}

Mlig455_005831 {REF} {Length: 2953} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF02214.24, score=79.9]} {Human: ENSG00000136636, KCTD3, potassium channel tetramerization domain containing 3, [RH, Score=513, Expect=8e-173]} {Mouse: ENSMUSG00000026608, Kctd3, potassium channel tetramerisation domain containing 3, [RH, Score=512, Expect=2e-172]} {Dmel: FBgn0037758, CG9467, [RH, Score=362, Expect=1e-115]} {Celegans: WBGene00020721, T23B12.6, [RH, Score=365, Expect=1e-117]} {Smed: dd_Smed_v6_3856_0_1, dd_Smed_v6_3856_0_1, [RH, Score=266, Expect=8e-79]} {RNA1509_47253, RNA1509_53266} {RNA1310_12536, RNA1509_47253, RNA1509_53266} {RNA1509_47253, RNA1509_53266, RNA815_15392}
11. MligTC455_45359 1980 41.24 Mlig455_044570

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.626

 PTTG1IP 0.959 - - - - 0.959 - Mlig455_044570 {REF} {Length: 1706} {Pfam: Wnt and FGF inhibitory regulator [PF13908.8, score=21.4]} {Human: ENSG00000183255, PTTG1IP, PTTG1 interacting protein, [RH, Score=75.1, Expect=1e-16]} {Mouse: ENSMUSG00000009291, Pttg1ip, pituitary tumor-transforming 1 interacting protein, [RH, Score=80.5, Expect=4e-19]} {RNA1509_1864, RNA1509_49582} {RNA1310_29337, RNA1509_49582} {RNA1509_49582, RNA815_11822}
12. MligTC455_36568 355 7.4 Mlig455_063489

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_063489 {REF} {Length: 3305} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=20.8]} {RNA1509_20583, RNA1509_58391} {RNA1310_17633, RNA1509_20583, RNA1509_58391} {RNA1509_20583, RNA1509_58391, RNA815_8151}
13. MligTC455_28062 172 3.58 Mlig455_053509

Neo: -

Age: Down-Down-Up

 TFB1M 0.951 - - - - - 0.951 Mlig455_053509 {REF} {Length: 1823} {TRANSSPLICED} {Pfam: Ribosomal RNA adenine dimethylase [PF00398.22, score=118.8]; Methyltransferase domain [PF13649.8, score=22.9]; Protein of unknown function (DUF1698) [PF08003.13, score=19.7]; Methyltransferase domain [PF13489.8, score=18.7]} {Human: ENSG00000029639, TFB1M, transcription factor B1, mitochondrial, [RH, Score=237, Expect=3e-75]} {Mouse: ENSMUSG00000036983, Tfb1m, transcription factor B1, mitochondrial, [RH, Score=230, Expect=1e-72]} {Dmel: FBgn0261381, mtTFB1, Mitochondrial Transcription Factor B1, [RH, Score=198, Expect=2e-60]} {Celegans: WBGene00020189, tfbm-1, Dimethyladenosine transferase 1, mitochondrial, [RH, Score=243, Expect=2e-77]} {Smed: dd_Smed_v6_8684_0_1, dd_Smed_v6_8684_0_1, [RH, Score=282, Expect=7e-93]} {RNA1509_31959, RNA1509_40082, RNA1509_41405} {RNA1310_25999, RNA1509_31959, RNA1509_40082, RNA1509_41405} {RNA1509_31959, RNA1509_40082, RNA1509_41405, RNA815_11217}
14. MligTC455_28254 1015 21.15 Mlig455_030776

Neo: -

Age: -

 DUSP8 0.95 - - - - 0.950 - Mlig455_030776 {REF} {Length: 3178} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=131.7]; Rhodanese-like domain [PF00581.22, score=21.6]; Protein-tyrosine phosphatase [PF00102.29, score=18.8]} {Human: ENSG00000184545, DUSP8, dual specificity phosphatase 8, [RH, Score=240, Expect=6e-72]; ENSG00000273793, DUSP8, dual specificity phosphatase 8, [RH, Score=240, Expect=6e-72]; ENSG00000278165, DUSP8, dual specificity phosphatase 8, [RH, Score=240, Expect=6e-72]; ENSG00000280962, DUSP16, dual specificity phosphatase 16, [RH, Score=239, Expect=5e-71]; ENSG00000111266, DUSP16, dual specificity phosphatase 16, [RH, Score=239, Expect=5e-71]} {Mouse: ENSMUSG00000030203, Dusp16, dual specificity phosphatase 16, [RH, Score=237, Expect=2e-70]} {Dmel: FBgn0036844, Mkp3, Mitogen-activated protein kinase phosphatase 3, [RH, Score=144, Expect=2e-37]} {Celegans: WBGene00006923, vhp-1, Tyrosine-protein phosphatase vhp-1, [RH, Score=206, Expect=2e-59]} {Smed: dd_Smed_v6_8066_0_1, dd_Smed_v6_8066_0_1, [Score=158, Expect=4e-42]} {RNA1509_23189} {RNA1310_8102.1} {RNA815_3235}
15. MligTC455_30444 349 7.28 Mlig455_008721

Neo: -

Age: -

 ITPKC 0.95 - - - - - 0.950 Mlig455_008721 {REF} {Length: 3855} {TRANSSPLICED} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=109.3]} {Human: ENSG00000086544, ITPKC, inositol-trisphosphate 3-kinase C, [RH, Score=276, Expect=7e-87]} {Mouse: ENSMUSG00000003752, Itpkc, inositol 1,4,5-trisphosphate 3-kinase C, [RH, Score=281, Expect=6e-89]} {Dmel: FBgn0283680, IP3K2, Inositol 1,4,5-triphosphate kinase 2, [Score=251, Expect=1e-79]} {Celegans: WBGene00002979, lfe-2, Inositol-trisphosphate 3-kinase homolog, [Score=200, Expect=6e-61]} {Smed: dd_Smed_v6_3687_0_1, dd_Smed_v6_3687_0_1, [RH, Score=242, Expect=4e-75]} {RNA1509_34871} {RNA1310_22346.1} {RNA815_11408}
16. MligTC455_53526 6260 130.42 Mlig455_054218

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.256

 PURA 0.95 - - - 0.950 - - Mlig455_054218 {REF} {Length: 2023} {Pfam: PurA ssDNA and RNA-binding protein [PF04845.15, score=229.3]; Protein of unknown function (DUF3276) [PF11680.10, score=26.0]} {Human: ENSG00000185129, PURA, purine rich element binding protein A, [Score=172, Expect=2e-52]} {Mouse: ENSMUSG00000043991, Pura, purine rich element binding protein A, [Score=172, Expect=1e-52]} {Dmel: FBgn0022361, Pur-alpha, Purine-rich binding protein-alpha, [Score=192, Expect=4e-61]} {Celegans: WBGene00004046, plp-1, Pur alpha Like Protein, [Score=117, Expect=2e-32]} {Smed: dd_Smed_v6_346_0_1, dd_Smed_v6_346_0_1, [Score=203, Expect=1e-65]} {RNA1509_623} {RNA1310_13231.1} {RNA815_5606.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA