M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09346

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09346 18 0.38 Mlig455_026902

Neo: -

Age: -

 Mlig455_026902 {REF} {Length: 767} {RNA1509_25061} {RNA1310_41174} {RNA815_24984}

Cumulative graph for MligTC455_09346

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.228 0.73 1.00000 1.00000
RegionR2 0.553 0.73 0.99992 1.00000
RegionR3 -1.97 0.73 1.00000 1.00000
RegionR4 0.908 0.73 1.00000 1.00000
RegionR5 -2.821 0.73 1.00000 1.00000
RegionR6 0.412 0.73 0.99973 1.00000
RegionR7 1.865 0.73 1.00000 1.00000
RegionR8 -1.175 0.73 0.99968 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.801 0.73 0.99970 1.00000
RegenerationR2 0.888 0.73 0.99997 1.00000
RegenerationR3 2.18 0.73 1.00000 1.00000
RegenerationR4 -2.08 0.73 0.99979 1.00000
RegenerationR5 1.69 0.73 1.00000 1.00000
RegenerationR6 -0.045 0.73 1.00000 1.00000
RegenerationBL -0.056 0.73 1.00000 1.00000
RegenerationTP -0.082 0.73 1.00000 1.00000


Genes with expression patterns similar to MligTC455_09346

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09346 18 0.38 Mlig455_026902

Neo: -

Age: -

 2 1.000 1.000 - - - - Mlig455_026902 {REF} {Length: 767} {RNA1509_25061} {RNA1310_41174} {RNA815_24984}
2. MligTC455_04352 55 1.14 Mlig455_039494

Neo: -

Age: Up-Down-Down

 1.882 0.962 0.920 - - - - Mlig455_039494 {REF} {Length: 936} {RNA1509_52330} {RNA1310_54745} {RNA815_39086}
3. MligTC455_11775 29 0.61 Mlig455_051988

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.180

 1.855 0.961 0.894 - - - - Mlig455_051988 {REF} {Length: 1803} {RNA1310_35019} {RNA815_8697}
4. MligTC455_05905 36 0.75 Mlig455_023475

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.719

 1.696 0.966 0.730 - - - - Mlig455_023475 {REF} {Length: 1499} {RNA1310_26005} {RNA815_33627}
5. MligTC455_05822 11 0.24 Mlig455_054322, Mlig455_054334

Neo: -

Age: -

 0.981 0.981 - - - - -

Mlig455_054322 {REF} {Length: 1155} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.5]} {Smed: dd_Smed_v6_42389_0_1, dd_Smed_v6_42389_0_1, [Score=117, Expect=1e-30]} {RNA1310_64330}

Mlig455_054334 {REF} {Length: 1102} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=47.6]} {Smed: dd_Smed_v6_11922_0_1, dd_Smed_v6_11922_0_1, [Score=106, Expect=2e-26]} {RNA1310_64330}
6. MligTC455_32778 38 0.8 Mlig455_001655

Neo: Irradiation

Age: Up-Down-Down

 0.98 0.980 - - - - - Mlig455_001655 {REF} {Length: 1600} {RNA1509_58771} {RNA1310_5707} {RNA815_6105.1}
7. MligTC455_25700 11 0.24 Mlig455_013786

Neo: -

Age: -

 0.978 0.978 - - - - - Mlig455_013786 {REF} {Length: 1108} {RNA1509_25415} {RNA1310_53158} {RNA815_31786}
8. MligTC455_04539 93 1.94 Mlig455_022092

Neo: Germline

Age: Up-Down-Up

 0.974 0.974 - - - - - Mlig455_022092 {REF} {Length: 1302} {RNA1509_25806} {RNA1310_27297} {RNA815_14462}
9. MligTC455_03024 21 0.44 Mlig455_059052

Neo: -

Age: -

 0.972 0.972 - - - - - Mlig455_059052 {REF} {Length: 2443} {RNA1509_37050} {RNA1310_74404} {RNA815_50491.1}
10. MligTC455_07928 55 1.15 Mlig455_026232

Neo: -

Age: -

 0.966 0.966 - - - - - Mlig455_026232 {REF} {Length: 989} {NoTransDecoderORF} {RNA1509_48037} {RNA1310_118369} {RNA815_64342}
11. MligTC455_10066 14 0.29 Mlig455_058099

Neo: -

Age: -

 0.96 0.960 - - - - - Mlig455_058099 {REF} {Length: 622} {NoTransDecoderORF} {RNA1509_21785} {RNA1310_24382} {RNA815_20162}
12. MligTC455_14742 27 0.56 Mlig455_011035

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.645

 SMS 0.96 0.960 - - - - - Mlig455_011035 {REF} {Length: 2821} {Pfam: Spermine/spermidine synthase domain [PF01564.19, score=86.4]; Spermidine synthase tetramerisation domain [PF17284.4, score=24.9]} {Human: ENSG00000102172, SMS, spermine synthase, [RH, Score=158, Expect=5e-42]} {Mouse: ENSMUSG00000071708, Sms, spermine synthase, [RH, Score=158, Expect=4e-42]} {Dmel: FBgn0036272, CG4300, [RH, Score=165, Expect=8e-44]} {Smed: dd_Smed_v6_9035_0_1, dd_Smed_v6_9035_0_1, [Score=72.8, Expect=7e-14]} {RNA1509_38495} {RNA1310_22551} {RNA815_6564.2}
13. MligTC455_14739 27 0.56 Mlig455_011004

Neo: -

Age: Up-Down-Up

 0.956 0.956 - - - - - Mlig455_011004 {REF} {Length: 2846} {RNA1509_59017} {RNA1310_44813.1} {RNA815_9034.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA