M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09465

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09465 161 3.35 Mlig455_048329

Neo: Int S/G2/M

Age: -

 POFUT1 Mlig455_048329 {REF} {Length: 3911} {Pfam: GDP-fucose protein O-fucosyltransferase [PF10250.11, score=151.6]} {Human: ENSG00000101346, POFUT1, protein O-fucosyltransferase 1, [RH, Score=249, Expect=9e-79]} {Mouse: ENSMUSG00000046020, Pofut1, protein O-fucosyltransferase 1, [RH, Score=253, Expect=1e-80]} {Dmel: FBgn0033901, O-fut1, O-fucosyltransferase 1, [RH, Score=253, Expect=2e-80]} {Celegans: WBGene00015793, C15C7.7, GDP-fucose protein O-fucosyltransferase 1, [RH, Score=248, Expect=1e-78]} {RNA1509_19659} {RNA1310_20649} {RNA815_9088}

Cumulative graph for MligTC455_09465

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.98 2.43 0.29777 0.94764
RegionR2 0.657 2.43 0.55030 0.91576
RegionR3 0.798 2.43 0.40542 0.93252
RegionR4 0.991 2.43 0.33282 0.65114
RegionR5 1.654 2.43 0.02047 0.09874
RegionR6 0.203 2.43 0.77636 1.00000
RegionR7 0.776 2.43 0.52070 1.00000
RegionR8 -0.099 2.43 0.89579 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.267 2.43 0.18804 0.92781
RegenerationR2 0.942 2.43 0.10984 0.51867
RegenerationR3 0.752 2.43 0.26123 0.69619
RegenerationR4 -0.861 2.43 0.22055 0.66849
RegenerationR5 -0.179 2.43 0.75465 0.97318
RegenerationR6 0.72 2.43 0.34228 0.68798
RegenerationBL 0.629 2.43 0.53741 0.89683
RegenerationTP 1.043 2.43 0.31600 0.76096


Genes with expression patterns similar to MligTC455_09465

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09465 161 3.35 Mlig455_048329

Neo: Int S/G2/M

Age: -

 POFUT1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_048329 {REF} {Length: 3911} {Pfam: GDP-fucose protein O-fucosyltransferase [PF10250.11, score=151.6]} {Human: ENSG00000101346, POFUT1, protein O-fucosyltransferase 1, [RH, Score=249, Expect=9e-79]} {Mouse: ENSMUSG00000046020, Pofut1, protein O-fucosyltransferase 1, [RH, Score=253, Expect=1e-80]} {Dmel: FBgn0033901, O-fut1, O-fucosyltransferase 1, [RH, Score=253, Expect=2e-80]} {Celegans: WBGene00015793, C15C7.7, GDP-fucose protein O-fucosyltransferase 1, [RH, Score=248, Expect=1e-78]} {RNA1509_19659} {RNA1310_20649} {RNA815_9088}
2. MligTC455_09464 630 13.12 Mlig455_048305, Mlig455_048347

Neo: -

Age: -

 POFUT1 5.337 0.920 0.938 0.798 0.894 0.834 0.953

Mlig455_048305 {REF} {Length: 3202} {TRANSSPLICED} {Pfam: GDP-fucose protein O-fucosyltransferase [PF10250.11, score=151.6]} {Human: ENSG00000101346, POFUT1, protein O-fucosyltransferase 1, [RH, Score=249, Expect=5e-79]} {Mouse: ENSMUSG00000046020, Pofut1, protein O-fucosyltransferase 1, [RH, Score=254, Expect=6e-81]} {Dmel: FBgn0033901, O-fut1, O-fucosyltransferase 1, [RH, Score=253, Expect=8e-81]} {Celegans: WBGene00015793, C15C7.7, GDP-fucose protein O-fucosyltransferase 1, [RH, Score=244, Expect=2e-77]} {RNA1509_19659} {RNA1310_20649} {RNA815_9088}

Mlig455_048347 {REF} {Length: 2507} {Pfam: GDP-fucose protein O-fucosyltransferase [PF10250.11, score=143.3]} {Human: ENSG00000101346, POFUT1, protein O-fucosyltransferase 1, [Score=214, Expect=2e-65]} {Mouse: ENSMUSG00000046020, Pofut1, protein O-fucosyltransferase 1, [Score=211, Expect=9e-65]} {Dmel: FBgn0033901, O-fut1, O-fucosyltransferase 1, [Score=205, Expect=2e-62]} {Celegans: WBGene00015793, C15C7.7, GDP-fucose protein O-fucosyltransferase 1, [Score=204, Expect=3e-62]} {RNA1509_19659} {RNA1310_20649} {RNA815_9088}
3. MligTC455_49782 116 2.41 Mlig455_055413

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.547

Regeneration-upregulated BL: 5.364

Regeneration-enriched BL: 5.364

 TAX1BP3 0.96 - - - - - 0.960 Mlig455_055413 {REF} {Length: 1637} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=31.8]; PDZ domain [PF17820.3, score=25.7]; PDZ domain [PF13180.8, score=22.4]} {Human: ENSG00000213977, TAX1BP3, Tax1 binding protein 3, [Score=56.6, Expect=1e-10]} {Mouse: ENSMUSG00000040158, Tax1bp3, Tax1 (human T cell leukemia virus type I) binding protein 3, [Score=56.6, Expect=6e-11]} {Dmel: FBgn0035148, CG3402, [Score=72.0, Expect=5e-17]} {Celegans: WBGene00016678, C45G9.7, [Score=77.8, Expect=2e-19]} {RNA1509_46994} {RNA1310_49427.1} {RNA815_26268.2}
4. MligTC455_16247 405 8.43 Mlig455_052011, Mlig455_057230

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.392

 CXorf58 0.953 - - - - - 0.953

Mlig455_052011 {REF} {Length: 2077} {Human: ENSG00000165182, CXorf58, chromosome X open reading frame 58, [RH, Score=192, Expect=4e-58]} {Mouse: ENSMUSG00000005131, 4930550C14Rik, RIKEN cDNA 4930550C14 gene, [Score=57.8, Expect=5e-09]} {Smed: dd_Smed_v6_8151_0_3, dd_Smed_v6_8151_0_3, [RH, Score=108, Expect=2e-27]} {RNA1509_41758} {RNA1310_19977} {RNA815_9459}

Mlig455_057230 {REF} {Length: 3099} {Human: ENSG00000165182, CXorf58, chromosome X open reading frame 58, [RH, Score=194, Expect=9e-59]} {Mouse: ENSMUSG00000005131, 4930550C14Rik, RIKEN cDNA 4930550C14 gene, [Score=55.1, Expect=4e-08]} {Smed: dd_Smed_v6_8151_0_3, dd_Smed_v6_8151_0_3, [RH, Score=107, Expect=7e-27]} {RNA1509_41758} {RNA1310_19977} {RNA815_9459}
5. MligTC455_23143 413 8.6 Mlig455_008087

Neo: -

Age: -

Region-enriched R2: 2.201/0.04155

 INSR 0.953 - - - - - 0.953 Mlig455_008087 {REF} {Length: 5415} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=291.7]; Protein kinase domain [PF00069.27, score=128.3]; Receptor L domain [PF01030.26, score=118.3]; Furin-like cysteine rich region [PF00757.22, score=79.0]; Fibronectin type III domain [PF00041.23, score=43.3]; Growth factor receptor domain IV [PF14843.8, score=19.7]} {Human: ENSG00000171105, INSR, insulin receptor, [RH, Score=647, Expect=0.0]} {Mouse: ENSMUSG00000005534, Insr, insulin receptor, [RH, Score=643, Expect=0.0]} {Dmel: FBgn0283499, InR, Insulin-like receptor, [RH, Score=333, Expect=9e-93]} {Celegans: WBGene00000898, daf-2, Insulin-like receptor Insulin-like receptor subunit alpha Insulin-like receptor subunit beta, [RH, Score=477, Expect=6e-141]} {Smed: dd_Smed_v6_9006_0_1, dd_Smed_v6_9006_0_1, [RH, Score=516, Expect=7e-158]} {RNA1509_32205, RNA1509_5152} {RNA1310_762.1, RNA1509_32205, RNA1509_5152} {RNA1509_32205, RNA1509_5152, RNA815_285.1}
6. MligTC455_15831 260 5.42 Mlig455_018337

Neo: -

Age: logFC(26M/2M)=0.444

 0.952 - - - - 0.952 - Mlig455_018337 {REF} {Length: 1103} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF08242.14, score=59.8]; Methyltransferase domain [PF13489.8, score=58.1]; Methyltransferase domain [PF08241.14, score=57.1]; Methyltransferase domain [PF13847.8, score=52.1]; Methyltransferase domain [PF13649.8, score=51.1]; Tellurite resistance protein TehB [PF03848.16, score=20.2]} {RNA1509_14937} {RNA1310_7707.1} {RNA815_5313}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA