M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09471

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09471 58 1.20 Mlig455_006490

Neo: -

Age: -

 Mlig455_006490 {REF} {Length: 2908} {RNA1509_40891} {RNA1310_12069, RNA1509_40891} {RNA1509_40891, RNA815_2447}

Cumulative graph for MligTC455_09471

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.729 1.335 0.99988 1.00000
RegionR2 1.04 1.335 0.99985 1.00000
RegionR3 1.544 1.335 0.25577 0.80002
RegionR4 -2.117 1.335 0.99980 1.00000
RegionR5 2.897 1.335 0.01353 0.07222
RegionR6 -0.271 1.335 0.99987 1.00000
RegionR7 -0.056 1.335 0.99990 1.00000
RegionR8 -0.309 1.335 0.99986 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.139 1.335 0.21285 0.95139
RegenerationR2 3.965 1.335 0.01130 0.17322
RegenerationR3 2.892 1.335 0.12677 0.54797
RegenerationR4 3.986 1.335 0.01252 0.17226
RegenerationR5 0.919 1.335 0.55120 0.88643
RegenerationR6 5.679 1.335 0.00271 0.05962
RegenerationBL 4.152 1.335 0.06098 0.28679
RegenerationTP -0.169 1.335 1.00000 1.00000


Genes with expression patterns similar to MligTC455_09471

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09471 58 1.2 Mlig455_006490

Neo: -

Age: -

 3 1.000 - - 1.000 1.000 - Mlig455_006490 {REF} {Length: 2908} {RNA1509_40891} {RNA1310_12069, RNA1509_40891} {RNA1509_40891, RNA815_2447}
2. MligTC455_06158 9 0.18 Mlig455_032880

Neo: -

Age: -

 0.957 0.957 - - - - - Mlig455_032880 {REF} {Length: 2008} {Pfam: Glycine rich protein [PF12810.9, score=29.8]} {RNA1310_1880.1} {RNA815_25152}
3. MligTC455_30228 51 1.07 Mlig455_006181, Mlig455_030077, Mlig455_036075, Mlig455_036097, Mlig455_049726, Mlig455_070542

Neo: -

Age: -

Region-enriched R5: 3.456/0.03276

 PIF1 0.952 0.952 - - - - -

Mlig455_006181 {REF} {Length: 5128} {Pfam: PIF1-like helicase [PF05970.16, score=232.2]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=52.4, Expect=5e-06]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=52.0, Expect=5e-06]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=59.7, Expect=1e-08]} {Celegans: WBGene00019136, F59H6.5, [Score=565, Expect=2e-178]} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [Score=68.2, Expect=2e-13]} {RNA1509_5036} {RNA1310_4048.1} {RNA815_356.1}

Mlig455_030077 {REF} {Length: 6580} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=175.5]} {Celegans: WBGene00019136, F59H6.5, [Score=412, Expect=6e-125]} {Smed: dd_Smed_v6_5211_0_1, dd_Smed_v6_5211_0_1, [Score=72.4, Expect=4e-14]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_036075 {REF} {Length: 5097} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=332.7]; Helitron helicase-like domain at N-terminus [PF14214.8, score=170.5]; AAA domain [PF13604.8, score=44.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.3]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=124, Expect=3e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=118, Expect=2e-26]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=121, Expect=1e-27]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=783, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=1e-25]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_036097 {REF} {Length: 5327} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=332.5]; Helitron helicase-like domain at N-terminus [PF14214.8, score=170.4]; AAA domain [PF13604.8, score=44.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.2]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=124, Expect=3e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=118, Expect=1e-26]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=120, Expect=2e-27]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=770, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=1e-25]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_049726 {REF} {Length: 5322} {Pfam: PIF1-like helicase [PF05970.16, score=328.1]; Helitron helicase-like domain at N-terminus [PF14214.8, score=171.9]; AAA domain [PF13604.8, score=44.8]; UvrD-like helicase C-terminal domain [PF13538.8, score=24.3]; Helicase [PF02689.16, score=17.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=122, Expect=9e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=118, Expect=2e-26]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=118, Expect=9e-27]} {Celegans: WBGene00021194, Y16E11A.2, [Score=723, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=1e-25]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}

Mlig455_070542 {REF} {Length: 5678} {Pfam: PIF1-like helicase [PF05970.16, score=334.4]; Helitron helicase-like domain at N-terminus [PF14214.8, score=173.4]; AAA domain [PF13604.8, score=46.0]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.3]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=125, Expect=2e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=120, Expect=4e-27]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=120, Expect=2e-27]} {Celegans: WBGene00019136, F59H6.5, [Score=765, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=116, Expect=2e-26]} {RNA1509_5036} {RNA1310_728.1} {RNA815_356.1}
4. MligTC455_31681 13 0.28 Mlig455_041756

Neo: Germline

Age: Down-Up-Down

 PIF1 0.952 0.952 - - - - - Mlig455_041756 {REF} {Length: 4303} {Pfam: PIF1-like helicase [PF05970.16, score=333.6]; AAA domain [PF13604.8, score=46.2]; Helicase [PF02689.16, score=24.5]; UvrD-like helicase C-terminal domain [PF13538.8, score=20.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=89.7, Expect=1e-17]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=89.0, Expect=1e-17]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=87.0, Expect=3e-17]} {Celegans: WBGene00019136, F59H6.5, [Score=493, Expect=7e-155]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=107, Expect=5e-24]} {RNA1509_7410} {RNA1310_3337} {RNA815_358.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA