M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09681

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09681 6 0.12 Mlig455_068639

Neo: -

Age: -

 Mlig455_068639 {REF} {Length: 631} {NoTransDecoderORF} {RNA1509_56935} {RNA1310_57496} {RNA815_51778}

Cumulative graph for MligTC455_09681

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_09681

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09681 6 0.12 Mlig455_068639

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_068639 {REF} {Length: 631} {NoTransDecoderORF} {RNA1509_56935} {RNA1310_57496} {RNA815_51778}
2. MligTC455_15740 16 0.33 Mlig455_035153

Neo: -

Age: -

Region-enriched R5: 2.633/0.00195

Regeneration-downregulated R2: -2.853

Regeneration-depleted R2: -2.853

 0.983 - - - - 0.983 - Mlig455_035153 {REF} {Length: 1128} {Pfam: WSC domain [PF01822.21, score=54.4]; PAN domain [PF00024.28, score=25.4]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=52.8, Expect=1e-07]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=55.1, Expect=1e-08]} {RNA1310_29927} {RNA815_55032}
3. MligTC455_09670 7 0.16 Mlig455_044534

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_044534 {REF} {Length: 2130} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=142.3]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=58.5, Expect=7e-09]} {Smed: dd_Smed_v6_19727_0_1, dd_Smed_v6_19727_0_1, [Score=63.9, Expect=1e-10]} {RNA1310_139357}
4. MligTC455_26057 15 0.3 Mlig455_020002, Mlig455_026075

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.662

 UNC93A 0.953 - - - - 0.953 -

Mlig455_020002 {REF} {Length: 446} {Pfam: RNase H [PF00075.26, score=51.3]; Ion channel regulatory protein UNC-93 [PF05978.18, score=25.5]} {Human: ENSG00000112494, UNC93A, unc-93 homolog A, [Score=119, Expect=2e-28]} {Mouse: ENSMUSG00000067049, Unc93a, unc-93 homolog A, [Score=113, Expect=2e-26]; ENSMUSG00000056133, Unc93a2, unc-93 homolog A2, [Score=113, Expect=2e-26]} {Dmel: FBgn0027556, CG4928, [Score=135, Expect=7e-34]} {RNA1509_14738} {RNA1310_354.3} {RNA815_99}

Mlig455_026075 {REF} {Length: 1201} {Pfam: RNase H [PF00075.26, score=52.6]} {RNA1509_14738} {RNA1310_354.3} {RNA815_99}
5. MligTC455_26736 17 0.34 Mlig455_029447

Neo: -

Age: -

 PCSK5 0.953 - - - - 0.953 - Mlig455_029447 {REF} {Length: 2916} {Pfam: Subtilase family [PF00082.24, score=160.2]; Proprotein convertase P-domain [PF01483.22, score=69.6]; Peptidase S8 pro-domain [PF16470.7, score=26.3]} {Human: ENSG00000099139, PCSK5, proprotein convertase subtilisin/kexin type 5, [RH, Score=500, Expect=2e-169]} {Mouse: ENSMUSG00000030513, Pcsk6, proprotein convertase subtilisin/kexin type 6, [Score=502, Expect=4e-167]; ENSMUSG00000024713, Pcsk5, proprotein convertase subtilisin/kexin type 5, [Score=501, Expect=6e-167]; ENSMUSG00000030530, Furin, furin (paired basic amino acid cleaving enzyme), [Score=489, Expect=6e-164]} {Dmel: FBgn0004509, Fur1, Furin 1, [Score=483, Expect=1e-160]} {Celegans: WBGene00002232, kpc-1, Furin-like protease kpc-1, [Score=516, Expect=8e-176]} {Smed: dd_Smed_v6_10832_0_1, dd_Smed_v6_10832_0_1, [Score=528, Expect=0.0]} {RNA1509_27501} {RNA1310_8704.1} {RNA815_23019}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA