M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09889

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09889 5 0.10 Mlig455_026525, Mlig455_026624

Neo: -

Age: -

Mlig455_026525 {REF} {Length: 646} {RNA1509_20584} {RNA1310_9709.1} {RNA815_5646}

Mlig455_026624 {REF} {Length: 649} {NoTransDecoderORF} {RNA1509_20584} {RNA1310_9709.1} {RNA815_5646}

Cumulative graph for MligTC455_09889

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_09889

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09889 5 0.1 Mlig455_026525, Mlig455_026624

Neo: -

Age: -

 1 - - - 1.000 - -

Mlig455_026525 {REF} {Length: 646} {RNA1509_20584} {RNA1310_9709.1} {RNA815_5646}

Mlig455_026624 {REF} {Length: 649} {NoTransDecoderORF} {RNA1509_20584} {RNA1310_9709.1} {RNA815_5646}
2. MligTC455_08063 96 2.01 Mlig455_014162, Mlig455_032722, Mlig455_049942, Mlig455_060103, Mlig455_060104, Mlig455_068955, Mlig455_070974

Neo: -

Age: Up-Down-Down

 GIN1, RTL1 0.998 - - - 0.998 - -

Mlig455_014162 {REF} {Length: 6308} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=98.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.7]; Integrase core domain [PF00665.28, score=43.7]; Integrase zinc binding domain [PF17921.3, score=31.4]; Aspartyl protease [PF09668.12, score=24.8]; 'Cold-shock' DNA-binding domain [PF00313.24, score=19.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=108, Expect=6e-23]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=79.3, Expect=2e-14]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=306, Expect=4e-86]} {RNA1509_25922} {RNA1310_291.1} {RNA815_35572}

Mlig455_032722 {REF} {Length: 7124} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=104.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=98.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=97.7]; Integrase core domain [PF00665.28, score=43.9]; Integrase zinc binding domain [PF17921.3, score=31.2]; Aspartyl protease [PF09668.12, score=24.6]; 'Cold-shock' DNA-binding domain [PF00313.24, score=19.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=111, Expect=1e-23]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=79.7, Expect=1e-14]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=307, Expect=2e-86]} {RNA1509_25922} {RNA1310_291.1} {RNA815_35572}

Mlig455_049942 {REF} {Length: 8276} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=97.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.3]; Integrase core domain [PF00665.28, score=43.0]; Integrase zinc binding domain [PF17921.3, score=31.1]; Aspartyl protease [PF09668.12, score=24.6]; 'Cold-shock' DNA-binding domain [PF00313.24, score=19.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=108, Expect=8e-23]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=78.6, Expect=4e-14]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=308, Expect=6e-87]} {RNA1509_25922} {RNA1310_291.1, RNA1509_25922} {RNA1509_25922, RNA815_35572}

Mlig455_060103 {REF} {Length: 1299} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=98.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=97.7]; Integrase core domain [PF00665.28, score=43.7]; Integrase zinc binding domain [PF17921.3, score=31.4]; Aspartyl protease [PF09668.12, score=24.8]; 'Cold-shock' DNA-binding domain [PF00313.24, score=19.9]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=108, Expect=6e-23]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=79.3, Expect=2e-14]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=306, Expect=4e-86]} {RNA1509_25922} {RNA1310_291.1} {RNA815_35572}

Mlig455_060104 {REF} {Length: 2241} {Pfam: Integrase core domain [PF00665.28, score=45.7]} {Human: ENSG00000145723, GIN1, gypsy retrotransposon integrase 1, [Score=68.6, Expect=1e-11]} {Mouse: ENSMUSG00000026333, Gin1, gypsy retrotransposon integrase 1, [Score=67.8, Expect=1e-11]} {Smed: dd_Smed_v6_45837_0_1, dd_Smed_v6_45837_0_1, [Score=53.1, Expect=5e-09]} {RNA1509_25922} {RNA1310_291.1} {RNA815_41250}

Mlig455_068955 {REF} {Length: 8240} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=19.4]; Zinc knuckle [PF00098.25, score=18.6]} {RNA1509_25922} {RNA1310_291.1} {RNA815_35572}

Mlig455_070974 {REF} {Length: 4482} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=105.1]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=100.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=89.0, Expect=3e-18]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=182, Expect=3e-50]} {RNA1509_25922} {RNA1310_291.1} {RNA815_35572}
3. MligTC455_15408 207 4.32 Mlig455_009996, Mlig455_049846, Mlig455_049894

Neo: -

Age: Down-Up-Down

 0.969 - - - 0.969 - -

Mlig455_009996 {REF} {Length: 771} {RNA1310_39325} {RNA815_18022}

Mlig455_049846 {REF} {Length: 775} {RNA1310_39325} {RNA815_18022}

Mlig455_049894 {REF} {Length: 775} {RNA1310_39325} {RNA815_18022}
4. MligTC455_18826 116 2.41 Mlig455_060796, Mlig455_060825

Neo: -

Age: -

 0.969 - - - 0.969 - -

Mlig455_060796 {REF} {Length: 1815} {Pfam: Ectodermal ciliogenesis protein [PF15795.7, score=93.8]} {Dmel: FBgn0050263, stum, stumble, [RH, Score=75.5, Expect=9e-15]} {Celegans: WBGene00022392, Y97E10AL.1, [RH, Score=104, Expect=8e-27]} {Smed: dd_Smed_v6_12811_0_1, dd_Smed_v6_12811_0_1, [Score=114, Expect=2e-30]} {RNA1310_22955} {RNA815_13118}

Mlig455_060825 {REF} {Length: 2483} {Pfam: Ectodermal ciliogenesis protein [PF15795.7, score=92.9]} {Dmel: FBgn0050263, stum, stumble, [RH, Score=81.3, Expect=5e-16]} {Celegans: WBGene00022392, Y97E10AL.1, [RH, Score=104, Expect=8e-26]} {Smed: dd_Smed_v6_12811_0_1, dd_Smed_v6_12811_0_1, [RH, Score=115, Expect=3e-30]} {RNA1310_22955} {RNA815_13118}
5. MligTC455_27593 45 0.93 Mlig455_026137, Mlig455_026212

Neo: -

Age: logFC(26M/2M)=0.480

 PRKAR2A 0.958 - - - 0.958 - -

Mlig455_026137 {REF} {Length: 3182} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=134.9]; Regulatory subunit of type II PKA R-subunit [PF02197.19, score=41.2]} {Human: ENSG00000114302, PRKAR2A, protein kinase cAMP-dependent type II regulatory subunit alpha, [Score=300, Expect=3e-96]; ENSG00000284096, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=286, Expect=7e-91]; ENSG00000005249, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=286, Expect=7e-91]} {Mouse: ENSMUSG00000032601, Prkar2a, protein kinase, cAMP dependent regulatory, type II alpha, [Score=299, Expect=5e-96]; ENSMUSG00000002997, Prkar2b, protein kinase, cAMP dependent regulatory, type II beta, [Score=285, Expect=3e-90]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=325, Expect=1e-106]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=219, Expect=1e-66]} {Smed: dd_Smed_v6_4188_0_1, dd_Smed_v6_4188_0_1, [Score=343, Expect=6e-114]} {RNA1310_41564} {RNA815_43787}

Mlig455_026212 {REF} {Length: 3184} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=136.9]; Regulatory subunit of type II PKA R-subunit [PF02197.19, score=44.3]} {Human: ENSG00000114302, PRKAR2A, protein kinase cAMP-dependent type II regulatory subunit alpha, [Score=301, Expect=9e-99]; ENSG00000005249, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=288, Expect=1e-93]; ENSG00000284096, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=288, Expect=1e-93]} {Mouse: ENSMUSG00000032601, Prkar2a, protein kinase, cAMP dependent regulatory, type II alpha, [Score=300, Expect=1e-98]; ENSMUSG00000002997, Prkar2b, protein kinase, cAMP dependent regulatory, type II beta, [Score=286, Expect=6e-93]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=325, Expect=8e-109]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=220, Expect=2e-68]} {Smed: dd_Smed_v6_4188_0_1, dd_Smed_v6_4188_0_1, [Score=342, Expect=6e-116]} {RNA1310_41564} {RNA815_43787}
6. MligTC455_10345 30 0.63 Mlig455_018653, Mlig455_018855

Neo: -

Age: -

 0.956 - - - 0.956 - -

Mlig455_018653 {REF} {Length: 1014}

Mlig455_018855 {REF} {Length: 1036}
7. MligTC455_14437 27 0.56 Mlig455_042114

Neo: -

Age: Up-Down-Down

 RIMS2 0.952 - - - 0.952 - - Mlig455_042114 {REF} {Length: 5253} {Pfam: C2 domain [PF00168.32, score=108.2]; PDZ domain [PF17820.3, score=36.6]; PDZ domain [PF00595.26, score=26.1]} {Human: ENSG00000176406, RIMS2, regulating synaptic membrane exocytosis 2, [RH, Score=240, Expect=1e-63]} {Mouse: ENSMUSG00000037386, Rims2, regulating synaptic membrane exocytosis 2, [RH, Score=239, Expect=1e-63]} {Dmel: FBgn0053547, Rim, Rab3 interacting molecule, [RH, Score=244, Expect=7e-65]} {Celegans: WBGene00006750, unc-10, Rab-3-interacting molecule unc-10, [RH, Score=184, Expect=9e-47]} {Smed: dd_Smed_v6_15437_0_1, dd_Smed_v6_15437_0_1, [RH, Score=253, Expect=3e-68]} {RNA1509_30202} {RNA1310_7188} {RNA815_33679}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA