M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09915

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09915 25 0.52 Mlig455_009516

Neo: -

Age: -

 Mlig455_009516 {REF} {Length: 638} {NoTransDecoderORF} {RNA1509_43848} {RNA1310_1928.2} {RNA815_4656}

Cumulative graph for MligTC455_09915

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.686 0.866 1.00000 1.00000
RegionR2 -0.458 0.866 0.99955 1.00000
RegionR3 -0.585 0.866 1.00000 1.00000
RegionR4 0.253 0.866 0.99957 1.00000
RegionR5 -0.619 0.866 0.99987 1.00000
RegionR6 -0.642 0.866 1.00000 1.00000
RegionR7 0.124 0.866 1.00000 1.00000
RegionR8 0.241 0.866 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.876 0.866 1.00000 1.00000
RegenerationR2 3.484 0.866 0.22569 0.67379
RegenerationR3 2.869 0.866 0.37072 0.78435
RegenerationR4 2.397 0.866 0.38385 0.80371
RegenerationR5 3.302 0.866 0.26470 0.69616
RegenerationR6 5.873 0.866 0.13353 0.44862
RegenerationBL 4.307 0.866 0.20379 0.54405
RegenerationTP 2.261 0.866 0.49624 0.89815


Genes with expression patterns similar to MligTC455_09915

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09915 25 0.52 Mlig455_009516

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_009516 {REF} {Length: 638} {NoTransDecoderORF} {RNA1509_43848} {RNA1310_1928.2} {RNA815_4656}
2. MligTC455_08996 36 0.74 Mlig455_026604

Neo: -

Age: -

 ANK1 0.997 - - - - 0.997 - Mlig455_026604 {REF} {Length: 3269} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=180.0]; Ankyrin repeat [PF00023.32, score=153.8]; Ankyrin repeats (many copies) [PF13637.8, score=145.9]; Ankyrin repeat [PF13606.8, score=137.9]; Ankyrin repeats (many copies) [PF13857.8, score=125.8]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=159, Expect=6e-41]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=144, Expect=3e-36]; ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=143, Expect=4e-36]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=142, Expect=1e-35]; ENSMUSG00000032257, Ankk1, ankyrin repeat and kinase domain containing 1, [Score=138, Expect=2e-34]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=156, Expect=2e-40]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=149, Expect=2e-38]} {Smed: dd_Smed_v6_11663_0_2, dd_Smed_v6_11663_0_2, [Score=132, Expect=5e-33]} {RNA1509_49335} {RNA1310_6702} {RNA815_17045}
3. MligTC455_18031 8 0.17 Mlig455_002295

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_002295 {REF} {Length: 3074} {RNA1310_39442.1} {RNA815_64282}
4. MligTC455_11430 15 0.31 Mlig455_030266

Neo: -

Age: -

 KIAA1614 0.966 - - - - - 0.966 Mlig455_030266 {REF} {Length: 2564} {Human: ENSG00000135835, KIAA1614, KIAA1614, [Score=61.2, Expect=2e-10]} {Mouse: ENSMUSG00000033722, BC034090, cDNA sequence BC034090, [Score=61.2, Expect=9e-10]} {Celegans: WBGene00006363, syd-1, Rho GTPase-activating protein syd-1, [Score=50.4, Expect=1e-06]} {RNA1310_86711} {RNA815_36990}
5. MligTC455_05495 24 0.51 Mlig455_004288

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_004288 {REF} {Length: 1451} {RNA1509_36497} {RNA1310_33028.2} {RNA815_15751}
6. MligTC455_39365 88 1.84 Mlig455_017196

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_017196 {REF} {Length: 2469} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=26.8]} {RNA1310_52319.1} {RNA815_17448}
7. MligTC455_05699 713 14.86 Mlig455_020752

Neo: -

Age: Down-Down-Up

Region-enriched R6: 3.146/0.00029

 CTSA 0.96 - - - - - 0.960 Mlig455_020752 {REF} {Length: 1808} {Pfam: Serine carboxypeptidase [PF00450.24, score=277.6]} {Human: ENSG00000064601, CTSA, cathepsin A, [Score=164, Expect=6e-45]} {Mouse: ENSMUSG00000017760, Ctsa, cathepsin A, [Score=160, Expect=3e-46]} {Dmel: FBgn0038738, CG4572, [RH, Score=119, Expect=4e-29]} {Celegans: WBGene00019605, ctsa-1, Uncharacterized serine carboxypeptidase ctsa-1, [Score=190, Expect=8e-55]} {Smed: dd_Smed_v6_785_0_1, dd_Smed_v6_785_0_1, [Score=172, Expect=5e-48]} {RNA1509_29115} {RNA1310_19723} {RNA815_16882}
8. MligTC455_03980 21 0.43 Mlig455_020549

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_020549 {REF} {Length: 1678} {RNA1509_56890} {RNA1310_54748} {RNA815_39526}
9. MligTC455_18463 47 0.97 Mlig455_020503

Neo: Int S/G2/M

Age: -

Regeneration-upregulated R6: 4.847

Regeneration-enriched R6: 4.847

 NUBPL 0.957 - - - - - 0.957 Mlig455_020503 {REF} {Length: 1990} {TRANSSPLICED} {Pfam: NUBPL iron-transfer P-loop NTPase [PF10609.11, score=250.2]; CobQ/CobB/MinD/ParA nucleotide binding domain [PF01656.25, score=57.9]; AAA domain [PF13614.8, score=37.5]; ATPase MipZ [PF09140.13, score=30.8]; Anion-transporting ATPase [PF02374.17, score=22.7]; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family [PF00142.20, score=19.7]; Formate--tetrahydrofolate ligase [PF01268.21, score=17.3]} {Human: ENSG00000151413, NUBPL, nucleotide binding protein like, [Score=189, Expect=1e-57]} {Mouse: ENSMUSG00000035142, Nubpl, nucleotide binding protein-like, [RH, Score=189, Expect=1e-57]} {Dmel: FBgn0032986, CG3262, [RH, Score=176, Expect=4e-53]} {Celegans: WBGene00008664, nubp-1, Cytosolic Fe-S cluster assembly factor NUBP1 homolog, [Score=144, Expect=2e-40]} {Smed: dd_Smed_v6_9289_0_1, dd_Smed_v6_9289_0_1, [RH, Score=178, Expect=5e-54]} {RNA1509_41242, RNA1509_53559} {RNA1310_30409, RNA1509_41242, RNA1509_53559} {RNA1509_41242, RNA1509_53559, RNA815_54055}
10. MligTC455_16176 76 1.58 Mlig455_048486

Neo: Int S/G2/M

Age: -

 GCM1 0.956 - - - - 0.956 - Mlig455_048486 {REF} {Length: 2372} {Pfam: GCM motif protein [PF03615.17, score=223.0]} {Human: ENSG00000137270, GCM1, glial cells missing homolog 1, [RH, Score=197, Expect=3e-57]; ENSG00000124827, GCM2, glial cells missing homolog 2, [RH, Score=191, Expect=2e-54]} {Mouse: ENSMUSG00000023333, Gcm1, glial cells missing homolog 1, [RH, Score=192, Expect=1e-55]; ENSMUSG00000021362, Gcm2, glial cells missing homolog 2, [RH, Score=189, Expect=1e-53]} {Dmel: FBgn0014179, gcm, glial cells missing, [RH, Score=230, Expect=2e-69]} {Smed: dd_Smed_v6_15107_0_1, dd_Smed_v6_15107_0_1, [RH, Score=186, Expect=3e-54]} {RNA1509_58813} {RNA1310_66943} {RNA815_43872}
11. MligTC455_30897 28 0.58 Mlig455_012233, Mlig455_067987

Neo: Irradiation

Age: Up-Up-Down

 0.956 - - - - - 0.956

Mlig455_012233 {REF} {Length: 886} {RNA1509_3858} {RNA1310_928.1} {RNA815_529.1}

Mlig455_067987 {REF} {Length: 2097} {RNA1509_3858} {RNA1310_928.1} {RNA815_16674}
12. MligTC455_18004 298 6.21 Mlig455_032863

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.522

Region-enriched R6: 4.358/0.00000

 PCYT1B 0.954 - - - - - 0.954 Mlig455_032863 {REF} {Length: 1402} {Pfam: Cytidylyltransferase-like [PF01467.28, score=75.4]} {Human: ENSG00000102230, PCYT1B, phosphate cytidylyltransferase 1, choline, beta, [Score=145, Expect=7e-42]; ENSG00000161217, PCYT1A, phosphate cytidylyltransferase 1, choline, alpha, [Score=141, Expect=8e-41]} {Mouse: ENSMUSG00000035246, Pcyt1b, phosphate cytidylyltransferase 1, choline, beta isoform, [Score=145, Expect=5e-42]; ENSMUSG00000005615, Pcyt1a, phosphate cytidylyltransferase 1, choline, alpha isoform, [Score=139, Expect=2e-39]} {Dmel: FBgn0035231, Pcyt2, Phosphocholine cytidylyltransferase 2, [Score=142, Expect=7e-41]} {Celegans: WBGene00017241, pcyt-1, Putative choline-phosphate cytidylyltransferase, [Score=136, Expect=1e-38]} {Smed: dd_Smed_v6_4008_0_1, dd_Smed_v6_4008_0_1, [Score=150, Expect=1e-44]} {RNA1509_47420} {RNA1310_40040} {RNA815_23807.1}
13. MligTC455_32932 26 0.54 Mlig455_031885

Neo: -

Age: Up-Down-Up

 BEST4 0.954 - - - - 0.954 - Mlig455_031885 {REF} {Length: 2058} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=43.1]} {Human: ENSG00000142959, BEST4, bestrophin 4, [Score=67.0, Expect=5e-12]; ENSG00000039987, BEST2, bestrophin 2, [Score=66.2, Expect=1e-11]; ENSG00000167995, BEST1, bestrophin 1, [Score=64.7, Expect=2e-11]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=68.6, Expect=1e-12]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=90.5, Expect=3e-20]} {Celegans: WBGene00014989, best-23, Bestrophin homolog, [Score=70.9, Expect=9e-14]} {Smed: dd_Smed_v6_50289_0_1, dd_Smed_v6_50289_0_1, [Score=94.0, Expect=2e-23]} {RNA1509_22118} {RNA1310_38526} {RNA815_2846.1}
14. MligTC455_12915 62 1.3 Mlig455_008344

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_008344 {REF} {Length: 1389} {NoTransDecoderORF} {RNA1509_15367, RNA1509_22746} {RNA1310_38012, RNA1509_22746} {RNA1509_22746, RNA815_26892}
15. MligTC455_31365 164 3.42 Mlig455_063065

Neo: Irradiation

Age: Up-Down-Up, logFC(26M/2M)=0.426

 DDX27 0.953 - - - - - 0.953 Mlig455_063065 {REF} {Length: 3157} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=158.5]; Helicase conserved C-terminal domain [PF00271.33, score=98.5]; Type III restriction enzyme, res subunit [PF04851.17, score=23.2]; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=18.0]} {Human: ENSG00000124228, DDX27, DEAD-box helicase 27, [RH, Score=531, Expect=9e-180]} {Mouse: ENSMUSG00000017999, Ddx27, DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, [RH, Score=518, Expect=9e-175]} {Dmel: FBgn0021995, Rs1, [RH, Score=493, Expect=4e-165]} {Celegans: WBGene00022148, ddx-27, DEAD boX helicase homolog, [RH, Score=506, Expect=9e-171]} {Smed: dd_Smed_v6_5413_0_1, dd_Smed_v6_5413_0_1, [RH, Score=468, Expect=8e-158]} {RNA1509_13819} {RNA1310_9851, RNA1509_13819} {RNA1509_13819, RNA815_4333}
16. MligTC455_51842 25 0.53 Mlig455_023965

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_023965 {REF} {Length: 983} {RNA1310_64708} {RNA815_46410}
17. MligTC455_48216 746 15.54 Mlig455_066281

Neo: -

Age: -

Region-enriched R6: 3.801/0.00000

 MFSD5 0.952 - - - - - 0.952 Mlig455_066281 {REF} {Length: 2832} {TRANSSPLICED} {Pfam: Sugar-tranasporters, 12 TM [PF05631.16, score=94.1]} {Human: ENSG00000182544, MFSD5, major facilitator superfamily domain containing 5, [Score=51.2, Expect=3e-08]} {Mouse: ENSMUSG00000045665, Mfsd5, major facilitator superfamily domain containing 5, [Score=51.6, Expect=1e-08]} {Celegans: WBGene00021870, samt-1, SAM (S-Adenosyl Methionine) Transporter, [Score=81.3, Expect=2e-19]} {Smed: dd_Smed_v6_3699_0_1, dd_Smed_v6_3699_0_1, [Score=85.9, Expect=5e-21]} {RNA1509_29665} {RNA1310_24288.3} {RNA815_21097}
18. MligTC455_19071 245 5.1 Mlig455_015327, Mlig455_015370

Neo: -

Age: logFC(26M/2M)=-1.030

 0.951 - - - - - 0.951

Mlig455_015327 {REF} {Length: 1144} {RNA1509_45342} {RNA1310_18407} {RNA815_30771}

Mlig455_015370 {REF} {Length: 1190} {RNA1509_45342} {RNA1310_18407} {RNA815_30771}
19. MligTC455_27243 267 5.55 Mlig455_056960

Neo: -

Age: -

Region-enriched R6: 5.042/0.01997

 GM2A 0.951 - - - - - 0.951 Mlig455_056960 {REF} {Length: 734} {Human: ENSG00000196743, GM2A, GM2 ganglioside activator, [Score=46.2, Expect=3e-06]} {Mouse: ENSMUSG00000000594, Gm2a, GM2 ganglioside activator protein, [Score=49.7, Expect=3e-07]} {Smed: dd_Smed_v6_214_1_1, dd_Smed_v6_214_1_1, [Score=49.3, Expect=1e-07]} {RNA1509_7205} {RNA1310_35435} {RNA815_31339}
20. MligTC455_31888 153 3.19 Mlig455_019662, Mlig455_024517, Mlig455_031442, Mlig455_033592, Mlig455_053219, Mlig455_067079

Neo: -

Age: Down-Up-Down

 0.95 - - - - - 0.950

Mlig455_019662 {REF} {Length: 600} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4806) [PF16064.7, score=20.2]} {RNA1509_28268} {RNA1310_1293.1} {RNA815_1077}

Mlig455_024517 {REF} {Length: 1758} {TRANSSPLICED} {RNA1509_37997} {RNA1310_25701.2} {RNA815_1077}

Mlig455_031442 {REF} {Length: 1519} {TRANSSPLICED} {RNA1509_2283} {RNA1310_1293.1} {RNA815_1077}

Mlig455_033592 {REF} {Length: 1488} {TRANSSPLICED} {RNA1509_28268} {RNA1310_1293.1} {RNA815_1077}

Mlig455_053219 {REF} {Length: 914} {TRANSSPLICED} {RNA1509_13363} {RNA1310_1293.1} {RNA815_1077}

Mlig455_067079 {REF} {Length: 599} {TRANSSPLICED} {RNA1509_28268} {RNA1310_1293.1} {RNA815_1077}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA