M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10266

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10266 102 2.13 Mlig455_008904

Neo: -

Age: -

Region-enriched R5: 2.763/0.00190

 TRPM7 Mlig455_008904 {REF} {Length: 4425} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=84.4]; Ankyrin repeats (many copies) [PF13637.8, score=66.7]; Ankyrin repeat [PF13606.8, score=52.3]; Ankyrin repeats (many copies) [PF13857.8, score=46.4]; Ion transport protein [PF00520.33, score=40.6]; Ankyrin repeat [PF00023.32, score=40.2]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=122, Expect=3e-27]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=121, Expect=4e-27]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=127, Expect=4e-29]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=97.4, Expect=4e-20]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=220, Expect=2e-58]} {RNA1509_10974} {RNA1310_2160.2} {RNA815_3237}

Cumulative graph for MligTC455_10266

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.37 2.099 0.56471 1.00000
RegionR2 0.346 2.099 0.58401 0.93920
RegionR3 2.217 2.099 0.01042 0.15773
RegionR4 2.412 2.099 0.02543 0.12078
RegionR5 2.763 2.099 0.00012 0.00190
RegionR6 -0.207 2.099 0.75109 1.00000
RegionR7 -4.45 2.099 0.99977 1.00000
RegionR8 -4.452 2.099 0.99961 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.786 2.099 0.56520 1.00000
RegenerationR2 -1.035 2.099 0.20329 0.65006
RegenerationR3 -0.726 2.099 0.25483 0.68922
RegenerationR4 -0.82 2.099 0.27522 0.72126
RegenerationR5 -0.726 2.099 0.16530 0.59090
RegenerationR6 0.318 2.099 0.75010 0.95230
RegenerationBL -0.975 2.099 0.99976 1.00000
RegenerationTP -0.199 2.099 0.99996 1.00000


Genes with expression patterns similar to MligTC455_10266

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10266 102 2.13 Mlig455_008904

Neo: -

Age: -

Region-enriched R5: 2.763/0.00190

 TRPM7 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_008904 {REF} {Length: 4425} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=84.4]; Ankyrin repeats (many copies) [PF13637.8, score=66.7]; Ankyrin repeat [PF13606.8, score=52.3]; Ankyrin repeats (many copies) [PF13857.8, score=46.4]; Ion transport protein [PF00520.33, score=40.6]; Ankyrin repeat [PF00023.32, score=40.2]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=122, Expect=3e-27]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=121, Expect=4e-27]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=127, Expect=4e-29]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=97.4, Expect=4e-20]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=220, Expect=2e-58]} {RNA1509_10974} {RNA1310_2160.2} {RNA815_3237}
2. MligTC455_43721 327 6.82 Mlig455_063423

Neo: -

Age: -

Region-enriched R3: 2.456/0.03595

 1.669 - 0.704 - - 0.965 - Mlig455_063423 {REF} {Length: 2914} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1295) [PF06966.14, score=191.4]; 3-oxo-5-alpha-steroid 4-dehydrogenase [PF02544.18, score=27.0]; Phospholipid methyltransferase [PF04191.15, score=21.1]; Isoprenylcysteine carboxyl methyltransferase (ICMT) family [PF04140.16, score=20.9]} {Dmel: FBgn0035914, CG6282, [RH, Score=167, Expect=2e-49]} {Smed: dd_Smed_v6_14327_0_1, dd_Smed_v6_14327_0_1, [RH, Score=156, Expect=1e-45]} {RNA1509_35384} {RNA1310_33212} {RNA815_13020.1}
3. MligTC455_39196 145 3.02 Mlig455_066396

Neo: -

Age: -

 PINK1 0.973 - - - - 0.973 - Mlig455_066396 {REF} {Length: 3123} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=58.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=30.3]} {Human: ENSG00000158828, PINK1, PTEN induced putative kinase 1, [RH, Score=122, Expect=3e-29]} {Mouse: ENSMUSG00000028756, Pink1, PTEN induced putative kinase 1, [RH, Score=125, Expect=2e-30]} {Dmel: FBgn0029891, Pink1, PTEN-induced putative kinase 1, [RH, Score=107, Expect=2e-24]} {Celegans: WBGene00003247, mig-15, Serine/threonine-protein kinase mig-15, [Score=55.8, Expect=5e-08]} {Smed: dd_Smed_v6_12125_0_1, dd_Smed_v6_12125_0_1, [Score=57.0, Expect=6e-09]} {RNA1509_22713, RNA1509_31782, RNA1509_6340} {RNA1310_11261.1, RNA1509_22713, RNA1509_31782, RNA1509_6340} {RNA1509_22713, RNA1509_31782, RNA1509_6340, RNA815_20404}
4. MligTC455_14051 85 1.78 Mlig455_020893

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_020893 {REF} {Length: 1633} {TRANSSPLICED} {RNA1509_24218} {RNA1310_25312.2} {RNA815_12390}
5. MligTC455_44095 28 0.58 Mlig455_018923

Neo: -

Age: -

Region-enriched R4: 5.240/0.00596

 PCDH17 0.956 - - - - 0.956 - Mlig455_018923 {REF} {Length: 4598} {Pfam: Cadherin domain [PF00028.19, score=236.4]; Cadherin-like [PF16184.7, score=27.2]; Cadherin-like [PF08266.14, score=26.5]} {Human: ENSG00000118946, PCDH17, protocadherin 17, [RH, Score=260, Expect=1e-70]} {Mouse: ENSMUSG00000051323, Pcdh19, protocadherin 19, [RH, Score=263, Expect=6e-72]; ENSMUSG00000035566, Pcdh17, protocadherin 17, [RH, Score=261, Expect=6e-71]; ENSMUSG00000045689, Pcdhb4, protocadherin beta 4, [RH, Score=259, Expect=2e-72]} {Dmel: FBgn0024836, stan, starry night, [Score=216, Expect=4e-56]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=176, Expect=4e-44]} {Smed: dd_Smed_v6_21489_0_1, dd_Smed_v6_21489_0_1, [Score=278, Expect=3e-78]} {RNA1509_38737} {RNA1310_26793} {RNA815_64569}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA