M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10646

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10646 2 0.05 Mlig455_013589

Neo: -

Age: -

 Mlig455_013589 {REF} {Length: 516} {NoTransDecoderORF} {RNA1310_111940}

Cumulative graph for MligTC455_10646

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_10646

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10646 2 0.05 Mlig455_013589

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_013589 {REF} {Length: 516} {NoTransDecoderORF} {RNA1310_111940}
2. MligTC455_52626 36 0.76 Mlig455_014369

Neo: -

Age: Down-Down-Up

 1 - - - - 1.000 - Mlig455_014369 {REF} {Length: 1855} {Pfam: Globin [PF00042.24, score=44.1]} {RNA1310_71631} {RNA815_18392}
3. MligTC455_14164 13 0.28 Mlig455_027997

Neo: -

Age: -

 0.999 - - - - 0.999 - Mlig455_027997 {REF} {Length: 5213} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=192.8]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=65.1, Expect=1e-10]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=68.2, Expect=7e-12]} {Smed: dd_Smed_v6_19599_0_1, dd_Smed_v6_19599_0_1, [Score=163, Expect=2e-43]} {RNA1509_59441} {RNA1310_30935} {RNA815_38827}
4. MligTC455_48520 46 0.96 Mlig455_004433

Neo: -

Age: -

 0.995 - - - - 0.995 - Mlig455_004433 {REF} {Length: 701} {RNA1310_56623} {RNA815_27009}
5. MligTC455_13852 16 0.34 Mlig455_070532

Neo: -

Age: -

 FBXO8 0.994 - - - - 0.994 - Mlig455_070532 {REF} {Length: 1923} {TRANSSPLICED} {Pfam: Sec7 domain [PF01369.22, score=88.0]; F-box-like [PF12937.9, score=24.5]} {Human: ENSG00000164117, FBXO8, F-box protein 8, [Score=259, Expect=4e-84]} {Mouse: ENSMUSG00000038206, Fbxo8, F-box protein 8, [Score=261, Expect=1e-84]} {Dmel: FBgn0086779, step, steppke, [Score=56.6, Expect=2e-08]} {Smed: dd_Smed_v6_11857_0_2, dd_Smed_v6_11857_0_2, [Score=273, Expect=1e-90]} {RNA1509_27536} {RNA1310_35513} {RNA815_17059}
6. MligTC455_52453 127 2.65 Mlig455_034004, Mlig455_060386

Neo: -

Age: -

Region-enriched R3: 3.580/0.00648

 0.99 - - - - 0.990 -

Mlig455_034004 {REF} {Length: 453} {NoTransDecoderORF} {RNA1509_42969} {RNA1310_78537} {RNA815_37747}

Mlig455_060386 {REF} {Length: 384} {RNA1509_24113} {RNA1310_4423} {RNA815_37747}
7. MligTC455_48160 12 0.25 Mlig455_059561

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_059561 {REF} {Length: 1191} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=27.9]} {RNA1310_31078} {RNA815_45415}
8. MligTC455_03058 57 1.18 Mlig455_063622

Neo: -

Age: Down-Up-Down

 0.984 - - - - 0.984 - Mlig455_063622 {REF} {Length: 2139} {Pfam: Lectin C-type domain [PF00059.23, score=30.0]} {Smed: dd_Smed_v6_32483_0_1, dd_Smed_v6_32483_0_1, [Score=58.5, Expect=2e-10]} {RNA1310_85243}
9. MligTC455_42329 23 0.48 Mlig455_067682

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_067682 {REF} {Length: 3699} {Pfam: Immunoglobulin domain [PF13895.8, score=59.5]; Immunoglobulin domain [PF13927.8, score=40.0]; Immunoglobulin I-set domain [PF07679.18, score=32.9]; Izumo-like Immunoglobulin domain [PF16706.7, score=29.3]; Immunoglobulin domain [PF00047.27, score=23.8]; Immunoglobulin V-set domain [PF07686.19, score=20.9]; F5/8 type C domain [PF00754.27, score=20.1]} {Mouse: ENSMUSG00000061462, Obscn, obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF, [Score=58.5, Expect=6e-08]} {RNA1509_58583} {RNA1310_84845} {RNA815_37856}
10. MligTC455_54684 4 0.08 Mlig455_062423

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_062423 {REF} {Length: 204} {NoTransDecoderORF}
11. MligTC455_30931 8 0.17 Mlig455_058745

Neo: -

Age: -

 TBCCD1 0.975 - - - - 0.975 - Mlig455_058745 {REF} {Length: 2416} {TRANSSPLICED} {Pfam: Tubulin binding cofactor C [PF07986.14, score=81.3]} {Human: ENSG00000113838, TBCCD1, TBCC domain containing 1, [RH, Score=244, Expect=3e-72]} {Mouse: ENSMUSG00000004462, Tbccd1, TBCC domain containing 1, [RH, Score=246, Expect=4e-73]} {Smed: dd_Smed_v6_12514_0_1, dd_Smed_v6_12514_0_1, [RH, Score=324, Expect=1e-102]} {RNA1509_44730} {RNA1310_4807.1} {RNA815_3591}
12. MligTC455_24537 46 0.96 Mlig455_009280

Neo: -

Age: logFC(26M/2M)=1.720

Region-enriched R4: 3.726/0.04899
Region-enriched R3: 3.461/0.04295

 P4HB 0.974 - - - - 0.974 - Mlig455_009280 {REF} {Length: 2535} {Pfam: Thioredoxin [PF00085.22, score=151.6]; Thioredoxin-like domain [PF13848.8, score=137.0]; Thioredoxin-like [PF13905.8, score=36.7]; Calsequestrin [PF01216.19, score=30.9]; ERp29, N-terminal domain [PF07912.15, score=29.5]; Thioredoxin-like [PF13899.8, score=27.9]; Thioredoxin-like domain [PF13098.8, score=27.8]; OST3 / OST6 family, transporter family [PF04756.15, score=26.5]; AhpC/TSA family [PF00578.23, score=19.0]} {Human: ENSG00000185624, P4HB, prolyl 4-hydroxylase subunit beta, [Score=416, Expect=4e-140]} {Mouse: ENSMUSG00000025130, P4hb, prolyl 4-hydroxylase, beta polypeptide, [Score=416, Expect=5e-140]} {Dmel: FBgn0014002, Pdi, Protein disulfide isomerase, [Score=381, Expect=4e-127]} {Celegans: WBGene00003963, pdi-2, Protein disulfide-isomerase 2, [Score=402, Expect=3e-135]} {Smed: dd_Smed_v6_250_0_1, dd_Smed_v6_250_0_1, [Score=419, Expect=4e-142]} {RNA1509_26478} {RNA1310_9678, RNA1509_26478} {RNA1509_26478, RNA815_5042}
13. MligTC455_42328 21 0.44 Mlig455_007412

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_007412 {REF} {Length: 3904} {Pfam: Immunoglobulin domain [PF13895.8, score=50.0]; Immunoglobulin domain [PF13927.8, score=42.6]; Immunoglobulin I-set domain [PF07679.18, score=29.9]; Immunoglobulin domain [PF00047.27, score=27.2]; Izumo-like Immunoglobulin domain [PF16706.7, score=21.5]; F5/8 type C domain [PF00754.27, score=20.9]; Immunoglobulin V-set domain [PF07686.19, score=19.5]} {Mouse: ENSMUSG00000061462, Obscn, obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF, [Score=52.0, Expect=4e-06]} {RNA1509_58583} {RNA1310_91007} {RNA815_37856}
14. MligTC455_14857 21 0.43 Mlig455_014926

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_014926 {REF} {Length: 368} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_57743.2} {RNA815_45547}
15. MligTC455_02552 131 2.72 Mlig455_057381, Mlig455_059553

Neo: -

Age: -

Region-enriched R4: 4.546/0.01568

 0.959 - - - - 0.959 -

Mlig455_057381 {REF} {Length: 732} {NoTransDecoderORF} {RNA1310_74178} {RNA815_37610}

Mlig455_059553 {REF} {Length: 709} {NoTransDecoderORF} {RNA1310_74178} {RNA815_37610}
16. MligTC455_15468 32 0.67 Mlig455_047347

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_047347 {REF} {Length: 620} {RNA1509_11494} {RNA1310_44564}
17. MligTC455_24658 23 0.47 Mlig455_032008

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.655

 0.951 - - - - 0.951 - Mlig455_032008 {REF} {Length: 2567} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=33.1]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=29.8]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_19759_0_1, dd_Smed_v6_19759_0_1, [Score=85.5, Expect=4e-18]} {RNA1310_42806} {RNA815_45324}
18. MligTC455_43083 230 4.79 Mlig455_010304, Mlig455_010335, Mlig455_065656

Neo: -

Age: -

 AHNAK 0.951 - - - - 0.951 -

Mlig455_010304 {REF} {Length: 1799} {TRANSSPLICED} {Human: ENSG00000124942, AHNAK, AHNAK nucleoprotein, [Score=48.9, Expect=3e-06]} {Mouse: ENSMUSG00000069833, Ahnak, AHNAK nucleoprotein (desmoyokin), [Score=54.3, Expect=2e-08]} {RNA1310_47293.1} {RNA815_36129}

Mlig455_010335 {REF} {Length: 540} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_47293.1} {RNA815_36129}

Mlig455_065656 {REF} {Length: 1733} {TRANSSPLICED} {RNA1310_47293.1} {RNA815_36129}
19. MligTC455_10353 3 0.06 Mlig455_056181

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.144

 STOM 0.95 - - - - 0.950 - Mlig455_056181 {REF} {Length: 2762} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=115.3]; SPFH domain-Band 7 family [PF13421.8, score=21.1]} {Human: ENSG00000148175, STOM, stomatin, [RH, Score=360, Expect=7e-125]} {Mouse: ENSMUSG00000026880, Stom, stomatin, [RH, Score=351, Expect=8e-122]} {Dmel: FBgn0260657, CG42540, [Score=363, Expect=2e-123]} {Celegans: WBGene00003166, mec-2, Mechanosensory protein 2, [RH, Score=385, Expect=1e-133]} {Smed: dd_Smed_v6_6396_0_1, dd_Smed_v6_6396_0_1, [RH, Score=433, Expect=2e-154]} {RNA1509_58730} {RNA1310_19440.1, RNA1509_58730} {RNA1509_58730, RNA815_9049.1}
20. MligTC455_20112 2 0.04 Mlig455_028978

Neo: -

Age: -

 IGSF9 0.95 - - - - 0.950 - Mlig455_028978 {REF} {Length: 3575} {Pfam: Immunoglobulin domain [PF13927.8, score=128.1]; Immunoglobulin I-set domain [PF07679.18, score=87.9]; Immunoglobulin domain [PF13895.8, score=82.0]; Immunoglobulin domain [PF00047.27, score=71.2]; Immunoglobulin V-set domain [PF07686.19, score=67.0]; Fibronectin type III domain [PF00041.23, score=35.3]; Izumo-like Immunoglobulin domain [PF16706.7, score=26.8]; Immunoglobulin domain [PF18452.3, score=21.8]} {Human: ENSG00000085552, IGSF9, immunoglobulin superfamily member 9, [Score=144, Expect=2e-34]; ENSG00000080854, IGSF9B, immunoglobulin superfamily member 9B, [Score=139, Expect=1e-32]} {Mouse: ENSMUSG00000037995, Igsf9, immunoglobulin superfamily, member 9, [Score=144, Expect=1e-34]} {Dmel: FBgn0028482, bdl, borderless, [Score=122, Expect=2e-28]} {Celegans: WBGene00020130, igcm-2, ImmunoGlobulin-like Cell adhesion Molecule family, [Score=138, Expect=2e-33]} {Smed: dd_Smed_v6_17743_0_1, dd_Smed_v6_17743_0_1, [Score=142, Expect=2e-34]} {RNA1310_20896} {RNA815_31205}
21. MligTC455_54440 4 0.08 Mlig455_037625

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_037625 {REF} {Length: 268} {NoTransDecoderORF} {RNA1509_3801} {RNA1310_19730} {RNA815_8211}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA