M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10821

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10821 8 0.16 Mlig455_046728

Neo: -

Age: -

 Mlig455_046728 {REF} {Length: 959} {RNA1310_8430.1} {RNA815_49540.2}

Cumulative graph for MligTC455_10821

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.705 0.533 0.99980 1.00000
RegionR2 2.75 0.533 0.99988 1.00000
RegionR3 0.518 0.533 0.99998 1.00000
RegionR4 -2.648 0.533 0.99976 1.00000
RegionR5 -0.532 0.533 0.99992 1.00000
RegionR6 0.291 0.533 0.99999 1.00000
RegionR7 1.095 0.533 0.99995 1.00000
RegionR8 1.231 0.533 0.99996 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.249 0.533 0.99993 1.00000
RegenerationR2 1.952 0.533 0.99975 1.00000
RegenerationR3 0.25 0.533 0.99996 1.00000
RegenerationR4 0.927 0.533 0.99994 1.00000
RegenerationR5 0.209 0.533 0.99991 1.00000
RegenerationR6 3.207 0.533 1.00000 1.00000
RegenerationBL -0.75 0.533 0.99991 1.00000
RegenerationTP 2.736 0.533 1.00000 1.00000


Genes with expression patterns similar to MligTC455_10821

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_10821 8 0.16 Mlig455_046728

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_046728 {REF} {Length: 959} {RNA1310_8430.1} {RNA815_49540.2}
2. MligTC455_19411 68 1.41 Mlig455_047909

Neo: -

Age: Down-Up-Down

 0.99 - - - - 0.990 - Mlig455_047909 {REF} {Length: 748} {RNA1310_53549} {RNA815_27051}
3. MligTC455_00195 12 0.26 Mlig455_015611

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_015611 {REF} {Length: 356} {NoTransDecoderORF} {RNA1509_41176} {RNA1310_121748} {RNA815_31270}
4. MligTC455_13178 19 0.4 Mlig455_017226

Neo: -

Age: -

 0.988 - - - - 0.988 - Mlig455_017226 {REF} {Length: 1864} {NoTransDecoderORF} {RNA1509_31653} {RNA1310_53562.1} {RNA815_34190}
5. MligTC455_14703 29 0.6 Mlig455_031744

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_031744 {REF} {Length: 568} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_45985} {RNA1310_6194.2} {RNA815_4662.1}
6. MligTC455_53582 22 0.46 Mlig455_067135

Neo: -

Age: -

 ZAN 0.98 - - - - 0.980 - Mlig455_067135 {REF} {Length: 2659} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=68.2, Expect=4e-11]} {Mouse: ENSMUSG00000079173, Zan, zonadhesin, [Score=53.1, Expect=1e-06]} {RNA1310_113822} {RNA815_58009}
7. MligTC455_22163 73 1.51 Mlig455_002003

Neo: -

Age: Up-Down-Down

 SEL1L2 0.972 - - - - 0.972 - Mlig455_002003 {REF} {Length: 1359} {Pfam: Sel1 repeat [PF08238.14, score=48.6]} {Human: ENSG00000101251, SEL1L2, SEL1L2, ERAD E3 ligase adaptor subunit, [Score=46.2, Expect=1e-05]} {Mouse: ENSMUSG00000074764, Sel1l2, sel-1 suppressor of lin-12-like 2 (C. elegans), [Score=48.9, Expect=1e-06]} {Smed: dd_Smed_v6_9387_0_1, dd_Smed_v6_9387_0_1, [Score=168, Expect=6e-53]} {RNA1310_48924} {RNA815_26470}
8. MligTC455_57714 15 0.31 Mlig455_011797

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_011797 {REF} {Length: 544} {RNA1509_42416} {RNA1310_122120}
9. MligTC455_09805 15 0.31 Mlig455_035798

Neo: -

Age: -

 GABBR2 0.952 - - - - 0.952 - Mlig455_035798 {REF} {Length: 3066} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=153.8]; Receptor family ligand binding region [PF01094.30, score=121.9]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=247, Expect=1e-69]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=245, Expect=4e-69]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=234, Expect=1e-64]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=209, Expect=6e-57]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=132, Expect=2e-34]} {RNA1509_13394} {RNA1310_65839} {RNA815_47481}
10. MligTC455_16439 147 3.07 Mlig455_026017, Mlig455_070446

Neo: -

Age: -

Region-enriched R2: 5.463/0.01159
Region-enriched R6: 4.166/0.03776

 SYN3 0.952 - - - - 0.952 -

Mlig455_026017 {REF} {Length: 1744} {Pfam: Synapsin, ATP binding domain [PF02750.16, score=157.5]} {Human: ENSG00000185666, SYN3, synapsin III, [Score=169, Expect=2e-47]; ENSG00000008056, SYN1, synapsin I, [Score=167, Expect=2e-46]; ENSG00000157152, SYN2, synapsin II, [Score=165, Expect=2e-49]} {Mouse: ENSMUSG00000037217, Syn1, synapsin I, [Score=169, Expect=2e-47]; ENSMUSG00000009394, Syn2, synapsin II, [Score=168, Expect=5e-48]; ENSMUSG00000059602, Syn3, synapsin III, [Score=168, Expect=1e-47]} {Dmel: FBgn0004575, Syn, Synapsin, [Score=169, Expect=3e-48]} {Celegans: WBGene00004913, snn-1, SyNapsiN; Synapsin, [Score=112, Expect=3e-28]} {Smed: dd_Smed_v6_3135_0_2, dd_Smed_v6_3135_0_2, [Score=167, Expect=3e-49]} {RNA1310_44259} {RNA815_33612}

Mlig455_070446 {REF} {Length: 1739} {Pfam: Synapsin, ATP binding domain [PF02750.16, score=159.2]} {Human: ENSG00000185666, SYN3, synapsin III, [Score=169, Expect=2e-47]; ENSG00000008056, SYN1, synapsin I, [Score=168, Expect=1e-46]; ENSG00000157152, SYN2, synapsin II, [Score=164, Expect=4e-49]} {Mouse: ENSMUSG00000037217, Syn1, synapsin I, [Score=170, Expect=1e-47]; ENSMUSG00000059602, Syn3, synapsin III, [Score=168, Expect=2e-47]; ENSMUSG00000009394, Syn2, synapsin II, [Score=166, Expect=2e-47]} {Dmel: FBgn0004575, Syn, Synapsin, [Score=175, Expect=2e-50]} {Celegans: WBGene00004913, snn-1, SyNapsiN; Synapsin, [Score=107, Expect=2e-26]} {Smed: dd_Smed_v6_3135_0_2, dd_Smed_v6_3135_0_2, [Score=173, Expect=3e-51]} {RNA1310_44259} {RNA815_33612}
11. MligTC455_45684 114 2.38 Mlig455_016688

Neo: -

Age: -

 KCNIP4 0.951 - - - - 0.951 - Mlig455_016688 {REF} {Length: 3071} {Pfam: EF-hand domain pair [PF13499.8, score=63.0]; EF hand [PF00036.34, score=59.2]; EF-hand domain [PF13405.8, score=50.6]; EF hand [PF13202.8, score=46.9]; EF-hand domain pair [PF13833.8, score=40.3]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=19.5]} {Human: ENSG00000185774, KCNIP4, potassium voltage-gated channel interacting protein 4, [RH, Score=205, Expect=7e-66]; ENSG00000120049, KCNIP2, potassium voltage-gated channel interacting protein 2, [RH, Score=198, Expect=9e-63]} {Mouse: ENSMUSG00000029088, Kcnip4, Kv channel interacting protein 4, [RH, Score=205, Expect=5e-66]; ENSMUSG00000025221, Kcnip2, Kv channel-interacting protein 2, [RH, Score=196, Expect=2e-62]} {Dmel: FBgn0265595, CG44422, [RH, Score=172, Expect=7e-51]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [Score=146, Expect=2e-43]} {Smed: dd_Smed_v6_9434_0_1, dd_Smed_v6_9434_0_1, [RH, Score=175, Expect=1e-54]} {RNA1509_44439} {RNA1310_26774} {RNA815_23603}
12. MligTC455_35865 23 0.48 Mlig455_015690

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_015690 {REF} {Length: 1122} {NoTransDecoderORF} {RNA1509_59554} {RNA1310_33225.1} {RNA815_38499}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA