TomoSeq data search

Data search

Results for MligTC455_11262

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_11262

46

0.96

Mlig455_017922

Neo: -

Age: Down-Down-Down

GIPC3

Mlig455_017922 {REF} {Length: 2800} {TRANSSPLICED} {Human: ENSG00000179855, GIPC3, GIPC PDZ domain containing family member 3, [Score=58.9, Expect=3e-08]} {Celegans: WBGene00001599, glh-2, ATP-dependent RNA helicase glh-2, [Score=50.8, Expect=3e-06]} {RNA1509_28507} {RNA1310_17556} {RNA815_8362}

Cumulative graph for MligTC455_11262

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.642	1.122	0.74689	1.00000
RegionR2	0.846	1.122	0.53625	0.90592
RegionR3	0.895	1.122	0.24652	0.78956
RegionR4	1.224	1.122	0.59529	0.90919
RegionR5	0.056	1.122	0.91541	1.00000
RegionR6	0.548	1.122	0.72161	1.00000
RegionR7	-0.369	1.122	0.99612	1.00000
RegionR8	-0.559	1.122	0.99372	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	8.863	1.122	0.10317	0.82220
RegenerationR2	1.92	1.122	0.10512	0.51032
RegenerationR3	2.737	1.122	0.00996	0.18249
RegenerationR4	1.037	1.122	0.10860	0.50770
RegenerationR5	2.831	1.122	0.00263	0.08965
RegenerationR6	2.114	1.122	0.08753	0.36981
RegenerationBL	0.963	1.122	0.93442	1.00000
RegenerationTP	4.918	1.122	0.00031	0.02369

Genes with expression patterns similar to MligTC455_11262

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_11262	46	0.96	Mlig455_017922	Neo: - Age: Down-Down-Down	GIPC3	3	1.000	1.000	-	-	-	1.000	Mlig455_017922 {REF} {Length: 2800} {TRANSSPLICED} {Human: ENSG00000179855, GIPC3, GIPC PDZ domain containing family member 3, [Score=58.9, Expect=3e-08]} {Celegans: WBGene00001599, glh-2, ATP-dependent RNA helicase glh-2, [Score=50.8, Expect=3e-06]} {RNA1509_28507} {RNA1310_17556} {RNA815_8362}
2.	MligTC455_49956	359	7.48	Mlig455_038752	Neo: - Age: - Region-enriched R7: 2.608/0.00003	CHRNA6	0.98	-	-	-	-	-	0.980	Mlig455_038752 {REF} {Length: 3206} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=250.2]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=225.4]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=392, Expect=2e-131]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=385, Expect=2e-128]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=373, Expect=2e-123]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=391, Expect=5e-131]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=386, Expect=5e-129]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=374, Expect=3e-124]} {Dmel: FBgn0000038, nAChRbeta1, nicotinic Acetylcholine Receptor beta1, [RH, Score=511, Expect=8e-178]} {Celegans: WBGene00000043, acr-3, Acetylcholine receptor subunit beta-type acr-3, [RH, Score=424, Expect=4e-144]} {Smed: dd_Smed_v6_12535_0_1, dd_Smed_v6_12535_0_1, [RH, Score=482, Expect=1e-165]} {RNA1509_36865} {RNA1310_10120, RNA1509_36865} {RNA1509_36865, RNA815_4108}
3.	MligTC455_24416	437	9.1	Mlig455_036519	Neo: - Age: Down-Up-Down Region-enriched R8: 2.853/0.02042		0.975	-	-	-	-	-	0.975	Mlig455_036519 {REF} {Length: 1764} {RNA1310_33116} {RNA815_41020}
4.	MligTC455_43834	628	13.08	Mlig455_024930	Neo: - Age: -	SOX14	0.965	-	-	-	-	-	0.965	Mlig455_024930 {REF} {Length: 5050} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=86.2]; HMG-box domain [PF09011.12, score=43.1]} {Human: ENSG00000168875, SOX14, SRY-box 14, [Score=109, Expect=2e-27]; ENSG00000125285, SOX21, SRY-box 21, [Score=107, Expect=1e-26]; ENSG00000129194, SOX15, SRY-box 15, [Score=104, Expect=1e-25]; ENSG00000181449, SOX2, SRY-box 2, [Score=104, Expect=4e-25]} {Mouse: ENSMUSG00000053747, Sox14, SRY (sex determining region Y)-box 14, [Score=109, Expect=1e-27]; ENSMUSG00000061517, Sox21, SRY (sex determining region Y)-box 21, [Score=107, Expect=9e-27]; ENSMUSG00000074637, Sox2, SRY (sex determining region Y)-box 2, [Score=104, Expect=3e-25]} {Dmel: FBgn0000411, D, dachs, [Score=116, Expect=3e-29]} {Celegans: WBGene00004949, sox-2, Transcription factor sox-2, [Score=107, Expect=1e-26]} {Smed: dd_Smed_v6_36521_0_1, dd_Smed_v6_36521_0_1, [Score=103, Expect=4e-25]} {RNA1509_6414} {RNA1310_19145.1} {RNA815_3816.1}
5.	MligTC455_30986	631	13.14	Mlig455_010831, Mlig455_033221	Neo: - Age: - Region-enriched R7: 2.524/0.00004 Region-enriched R8: 2.210/0.01025 Regeneration-downregulated BL: -6.030 Regeneration-depleted BL: -6.030	PITPNC1	0.964	-	-	-	-	-	0.964	Mlig455_010831 {REF} {Length: 1024} {Pfam: Phosphatidylinositol transfer protein [PF02121.20, score=91.8]} {Human: ENSG00000154217, PITPNC1, phosphatidylinositol transfer protein cytoplasmic 1, [Score=88.6, Expect=3e-21]} {Mouse: ENSMUSG00000040430, Pitpnc1, phosphatidylinositol transfer protein, cytoplasmic 1, [Score=89.0, Expect=1e-21]} {Dmel: FBgn0027872, rdgBbeta, [Score=91.3, Expect=2e-22]} {Celegans: WBGene00010813, pitp-1, PhosphatidylInositol Transfer Protein family, [Score=71.2, Expect=8e-15]} {Smed: dd_Smed_v6_580_0_1, dd_Smed_v6_580_0_1, [Score=65.9, Expect=2e-13]} {RNA1509_38619} {RNA1310_18833} {RNA815_8161} Mlig455_033221 {REF} {Length: 1640} {Pfam: Phosphatidylinositol transfer protein [PF02121.20, score=237.1]} {Human: ENSG00000154217, PITPNC1, phosphatidylinositol transfer protein cytoplasmic 1, [Score=144, Expect=4e-39]} {Mouse: ENSMUSG00000040430, Pitpnc1, phosphatidylinositol transfer protein, cytoplasmic 1, [Score=145, Expect=6e-40]} {Dmel: FBgn0027872, rdgBbeta, [Score=134, Expect=1e-35]} {Celegans: WBGene00010813, pitp-1, PhosphatidylInositol Transfer Protein family, [Score=111, Expect=1e-25]} {Smed: dd_Smed_v6_7211_0_2, dd_Smed_v6_7211_0_2, [Score=114, Expect=6e-27]} {RNA1509_38619} {RNA1310_18833} {RNA815_8161}
6.	MligTC455_30985	442	9.22	Mlig455_010824	Neo: - Age: Down-Up-Down Region-enriched R7: 2.207/0.00023 Regeneration-downregulated BL: -3.092 Regeneration-depleted BL: -3.092		0.961	-	-	-	-	-	0.961	Mlig455_010824 {REF} {Length: 2717} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=178.4]; Family of unknown function (DUF5641) [PF18701.3, score=106.4]; Integrase zinc binding domain [PF17921.3, score=34.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=32.6]} {Celegans: WBGene00044435, Y20F4.8, [Score=64.7, Expect=9e-11]} {Smed: dd_Smed_v6_22202_0_1, dd_Smed_v6_22202_0_1, [RH, Score=119, Expect=5e-31]} {RNA1509_9219} {RNA1310_468} {RNA815_355.1}
7.	MligTC455_44372	319	6.64	Mlig455_016467	Neo: - Age: - Region-enriched R2: 2.783/0.04502		0.959	-	-	-	-	-	0.959	Mlig455_016467 {REF} {Length: 3430} {Pfam: Innexin [PF00876.20, score=423.2]} {Dmel: FBgn0027108, Inx2, Innexin 2, [Score=107, Expect=2e-25]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=332, Expect=1e-110]} {Smed: dd_Smed_v6_6114_0_1, dd_Smed_v6_6114_0_1, [RH, Score=569, Expect=0.0]} {RNA1509_40288} {RNA1310_5443} {RNA815_16099}
8.	MligTC455_34119	362	7.55	Mlig455_048589, Mlig455_048669	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.585 Region-enriched R7: 2.341/0.00080	ANGPT4	0.958	-	-	-	-	-	0.958	Mlig455_048589 {REF} {Length: 2801} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=82.9]} {Human: ENSG00000101280, ANGPT4, angiopoietin 4, [Score=75.5, Expect=1e-13]} {Mouse: ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=72.4, Expect=7e-13]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=70.5, Expect=6e-13]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=68.9, Expect=1e-11]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=68.9, Expect=1e-11]} {Dmel: FBgn0003326, sca, scabrous, [Score=67.0, Expect=5e-11]} {RNA1509_45532} {RNA1310_12662} {RNA815_4426} Mlig455_048669 {REF} {Length: 2277} {RNA1509_45532} {RNA1310_12662} {RNA815_4426}
9.	MligTC455_50155	542	11.29	Mlig455_010493	Neo: - Age: Down-Down-Up Regeneration-upregulated BL: 2.962 Regeneration-enriched BL: 2.962	BEST2	0.957	-	-	-	-	-	0.957	Mlig455_010493 {REF} {Length: 2707} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=157.0]} {Human: ENSG00000039987, BEST2, bestrophin 2, [Score=102, Expect=2e-22]} {Mouse: ENSMUSG00000052819, Best2, bestrophin 2, [Score=103, Expect=6e-23]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=178, Expect=6e-48]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=146, Expect=2e-37]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=235, Expect=7e-71]} {RNA1509_40942} {RNA1310_14129.1} {RNA815_5240}
10.	MligTC455_25726	567	11.81	Mlig455_008842	Neo: - Age: -		0.955	-	-	-	-	-	0.955	Mlig455_008842 {REF} {Length: 4919} {TRANSSPLICED} {Smed: dd_Smed_v6_2540_0_1, dd_Smed_v6_2540_0_1, [Score=49.3, Expect=2e-07]} {RNA1509_31649, RNA1509_58559} {RNA1310_39518, RNA1509_31649, RNA1509_58559} {RNA1509_31649, RNA1509_58559, RNA815_22089.1}
11.	MligTC455_25727	1329	27.68	Mlig455_008944	Neo: - Age: -		0.955	-	-	-	-	-	0.955	Mlig455_008944 {REF} {Length: 2871} {TRANSSPLICED} {Pfam: Membrane-associating domain [PF01284.25, score=18.7]} {Smed: dd_Smed_v6_2540_0_1, dd_Smed_v6_2540_0_1, [RH, Score=49.7, Expect=1e-07]} {RNA1509_23314, RNA1509_38959} {RNA1310_39518, RNA1509_23314, RNA1509_38959} {RNA1509_23314, RNA1509_38959, RNA815_22089.1}
12.	MligTC455_32783	474	9.88	Mlig455_018684	Neo: - Age: -	PRKAR2A	0.955	-	-	-	-	-	0.955	Mlig455_018684 {REF} {Length: 2197} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=137.7]; Regulatory subunit of type II PKA R-subunit [PF02197.19, score=45.3]} {Human: ENSG00000114302, PRKAR2A, protein kinase cAMP-dependent type II regulatory subunit alpha, [Score=369, Expect=2e-125]} {Mouse: ENSMUSG00000032601, Prkar2a, protein kinase, cAMP dependent regulatory, type II alpha, [RH, Score=384, Expect=2e-131]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=391, Expect=8e-135]} {Celegans: WBGene00002190, kin-2, cAMP-dependent protein kinase regulatory subunit, [Score=215, Expect=1e-66]} {Smed: dd_Smed_v6_2902_0_1, dd_Smed_v6_2902_0_1, [Score=436, Expect=1e-152]} {RNA1509_11023, RNA1509_16905, RNA1509_21256, RNA1509_39329, RNA1509_45454} {RNA1310_11471, RNA1509_11023, RNA1509_16905, RNA1509_21256, RNA1509_39329, RNA1509_45454} {RNA1509_11023, RNA1509_16905, RNA1509_21256, RNA1509_39329, RNA1509_45454, RNA815_4244.1}
13.	MligTC455_32099	262	5.47	Mlig455_009675	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.587		0.953	-	-	-	-	-	0.953	Mlig455_009675 {REF} {Length: 3336} {RNA1509_32552} {RNA1310_22318, RNA1509_32552} {RNA1509_32552, RNA815_9516}
14.	MligTC455_17355	454	9.46	Mlig455_042392	Neo: - Age: -		0.952	-	-	-	-	-	0.952	Mlig455_042392 {REF} {Length: 1844} {RNA1509_44829, RNA1509_47909} {RNA1310_36451, RNA1509_44829, RNA1509_47909} {RNA1509_44829, RNA1509_47909, RNA815_18418}
15.	MligTC455_35577	603	12.56	Mlig455_008358	Neo: - Age: -		0.952	-	-	-	-	-	0.952	Mlig455_008358 {REF} {Length: 1277} {RNA1509_45672} {RNA1310_27285} {RNA815_11787.1}
16.	MligTC455_04576	612	12.76	Mlig455_021640, Mlig455_021695	Neo: - Age: -		0.95	-	-	-	-	-	0.950	Mlig455_021640 {REF} {Length: 1352} {NoTransDecoderORF} {RNA1509_48466} {RNA1310_50203} {RNA815_23005} Mlig455_021695 {REF} {Length: 2808} {TRANSSPLICED} {Pfam: Homeobox associated leucine zipper [PF02183.20, score=28.7]} {RNA1509_34824, RNA1509_48466} {RNA1310_27563, RNA1509_34824, RNA1509_48466} {RNA1509_34824, RNA1509_48466, RNA815_17356}
17.	MligTC455_20208	102	2.11	Mlig455_065482	Neo: Int S/G2/M Age: -	ATOH1	0.95	-	-	-	-	-	0.950	Mlig455_065482 {REF} {Length: 2619} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=57.3]} {Human: ENSG00000172238, ATOH1, atonal bHLH transcription factor 1, [Score=76.3, Expect=2e-16]} {Mouse: ENSMUSG00000073043, Atoh1, atonal bHLH transcription factor 1, [Score=72.8, Expect=2e-15]} {Dmel: FBgn0037937, Fer3, 48 related 3, [Score=74.7, Expect=4e-17]} {Celegans: WBGene00003018, lin-32, [Score=73.6, Expect=3e-17]} {Smed: dd_Smed_v6_26877_0_1, dd_Smed_v6_26877_0_1, [Score=68.2, Expect=7e-16]} {RNA1310_39594.1} {RNA815_39695}

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