M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11367

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11367 45 0.94 Mlig455_016611

Neo: -

Age: -

 Mlig455_016611 {REF} {Length: 2223} {TRANSSPLICED} {Pfam: Afadin- and alpha -actinin-Binding [PF11559.10, score=57.0]; Outer membrane protein (OmpH-like) [PF03938.16, score=19.1]} {Mouse: ENSMUSG00000036825, Ssx2ip, synovial sarcoma, X 2 interacting protein, [RH, Score=92.4, Expect=1e-19]} {RNA1509_10737} {RNA1310_9399} {RNA815_26177}

Cumulative graph for MligTC455_11367

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.282 1.235 1.00000 1.00000
RegionR2 1.112 1.235 0.53661 0.90616
RegionR3 -1.29 1.235 0.95355 1.00000
RegionR4 -0.209 1.235 0.78689 1.00000
RegionR5 1.668 1.235 0.28804 0.61878
RegionR6 -3.643 1.235 1.00000 1.00000
RegionR7 1.403 1.235 0.44698 1.00000
RegionR8 2.24 1.235 0.36594 0.99987

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.771 1.235 0.99986 1.00000
RegenerationR2 -0.66 1.235 0.65530 0.93869
RegenerationR3 1.404 1.235 0.56635 0.89218
RegenerationR4 -1.023 1.235 0.60243 0.91424
RegenerationR5 -0.521 1.235 0.79717 0.98784
RegenerationR6 2.492 1.235 0.30584 0.65456
RegenerationBL 3.579 1.235 0.11586 0.40277
RegenerationTP -0.59 1.235 0.79070 1.00000


Genes with expression patterns similar to MligTC455_11367

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11367 45 0.94 Mlig455_016611

Neo: -

Age: -

 4 1.000 - 1.000 - 1.000 1.000 Mlig455_016611 {REF} {Length: 2223} {TRANSSPLICED} {Pfam: Afadin- and alpha -actinin-Binding [PF11559.10, score=57.0]; Outer membrane protein (OmpH-like) [PF03938.16, score=19.1]} {Mouse: ENSMUSG00000036825, Ssx2ip, synovial sarcoma, X 2 interacting protein, [RH, Score=92.4, Expect=1e-19]} {RNA1509_10737} {RNA1310_9399} {RNA815_26177}
2. MligTC455_50492 117 2.44 Mlig455_025367, Mlig455_025419

Neo: -

Age: -

 DPP6 1.74 - - - - 0.788 0.952

Mlig455_025367 {REF} {Length: 6334} {Pfam: Dipeptidyl peptidase IV (DPP IV) N-terminal region [PF00930.23, score=212.5]; Prolyl oligopeptidase family [PF00326.23, score=141.8]; Dienelactone hydrolase family [PF01738.20, score=20.7]; Putative esterase [PF00756.22, score=19.5]} {Human: ENSG00000282974, DPP6, dipeptidyl peptidase like 6, [Score=345, Expect=2e-105]; ENSG00000130226, DPP6, dipeptidyl peptidase like 6, [Score=345, Expect=2e-105]} {Mouse: ENSMUSG00000061576, Dpp6, dipeptidylpeptidase 6, [RH, Score=352, Expect=3e-108]} {Dmel: FBgn0031741, CG11034, [RH, Score=294, Expect=2e-87]} {Celegans: WBGene00001054, dpf-1, Dipeptidyl peptidase family member 1, [RH, Score=258, Expect=4e-74]} {Smed: dd_Smed_v6_9183_0_1, dd_Smed_v6_9183_0_1, [Score=444, Expect=2e-143]} {RNA1509_12435} {RNA1310_3631.2, RNA1509_12435} {RNA1509_12435, RNA815_1805}

Mlig455_025419 {REF} {Length: 3421} {Pfam: Dipeptidyl peptidase IV (DPP IV) N-terminal region [PF00930.23, score=211.8]; Prolyl oligopeptidase family [PF00326.23, score=141.7]; Dienelactone hydrolase family [PF01738.20, score=20.4]; Putative esterase [PF00756.22, score=19.3]} {Human: ENSG00000282974, DPP6, dipeptidyl peptidase like 6, [RH, Score=348, Expect=2e-106]; ENSG00000130226, DPP6, dipeptidyl peptidase like 6, [RH, Score=348, Expect=2e-106]} {Mouse: ENSMUSG00000061576, Dpp6, dipeptidylpeptidase 6, [RH, Score=357, Expect=1e-109]} {Dmel: FBgn0031741, CG11034, [RH, Score=293, Expect=1e-86]} {Celegans: WBGene00001054, dpf-1, Dipeptidyl peptidase family member 1, [RH, Score=259, Expect=4e-74]} {Smed: dd_Smed_v6_9183_0_1, dd_Smed_v6_9183_0_1, [Score=442, Expect=4e-142]} {RNA1509_32365} {RNA1310_3631.1} {RNA815_1805}
3. MligTC455_19341 9 0.18 Mlig455_036492

Neo: -

Age: -

 QRFPR 0.957 - - - - 0.957 - Mlig455_036492 {REF} {Length: 1943} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=156.1]; Olfactory receptor [PF13853.8, score=23.6]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=19.5]} {Human: ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [RH, Score=156, Expect=8e-42]} {Mouse: ENSMUSG00000029917, C130060K24Rik, RIKEN cDNA C130060K24 gene, [RH, Score=142, Expect=7e-37]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=135, Expect=2e-33]} {Celegans: WBGene00003808, npr-2, NeuroPeptide Receptor family, [Score=119, Expect=4e-29]} {Smed: dd_Smed_v6_22952_0_1, dd_Smed_v6_22952_0_1, [RH, Score=204, Expect=5e-60]} {RNA1310_48271} {RNA815_47592}
4. MligTC455_24746 59 1.23 Mlig455_046418

Neo: Int S/G2/M

Age: Up-Down-Up

 SLC16A12 0.954 - - - - 0.954 - Mlig455_046418 {REF} {Length: 2087} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=146.8]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=188, Expect=2e-52]; ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [Score=180, Expect=1e-49]; ENSG00000118596, SLC16A7, solute carrier family 16 member 7, [Score=179, Expect=1e-49]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=191, Expect=5e-54]; ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [Score=182, Expect=2e-50]} {Dmel: FBgn0033095, CG3409, [Score=196, Expect=1e-53]} {Celegans: WBGene00010834, mct-3, MonoCarboxylate Transporter family, [Score=195, Expect=9e-55]} {Smed: dd_Smed_v6_11626_0_3, dd_Smed_v6_11626_0_3, [Score=191, Expect=5e-54]} {RNA1509_21166} {RNA1310_10613.1, RNA1509_21166} {RNA1509_21166, RNA815_17148}
5. MligTC455_06130 80 1.66 Mlig455_060517

Neo: -

Age: Down-Down-Up

 0.952 - - - - - 0.952 Mlig455_060517 {REF} {Length: 2657} {Smed: dd_Smed_v6_10037_0_1, dd_Smed_v6_10037_0_1, [Score=47.4, Expect=1e-05]} {RNA1509_57082} {RNA1310_15367} {RNA815_2732.1}
6. MligTC455_30330 26 0.53 Mlig455_061523

Neo: -

Age: -

 TRAF6 0.951 - - - - - 0.951 Mlig455_061523 {REF} {Length: 3170} {Pfam: WD domain, G-beta repeat [PF00400.34, score=23.3]; TRAF-type zinc finger [PF02176.20, score=20.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=62.4, Expect=2e-09]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=65.1, Expect=1e-10]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [Score=77.0, Expect=9e-15]} {RNA1509_36404} {RNA1310_29668} {RNA815_11260}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA