M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11613

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11613 95 1.97 Mlig455_053792

Neo: -

Age: -

Region-enriched R5: 2.786/0.00237

 Mlig455_053792 {REF} {Length: 3305} {RNA1509_23777} {RNA1310_45506} {RNA815_24556}

Cumulative graph for MligTC455_11613

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 4.098 2.093 0.04634 0.51463
RegionR2 -0.2 2.093 0.76549 1.00000
RegionR3 -0.043 2.093 0.69405 1.00000
RegionR4 2.326 2.093 0.04686 0.18463
RegionR5 2.786 2.093 0.00016 0.00237
RegionR6 1.508 2.093 0.11450 0.61747
RegionR7 -5.162 2.093 0.99968 1.00000
RegionR8 -5.314 2.093 0.99952 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.957 2.093 0.24435 0.96633
RegenerationR2 -0.442 2.093 0.61223 0.92019
RegenerationR3 0.325 2.093 0.75367 0.96586
RegenerationR4 -1.097 2.093 0.24713 0.69510
RegenerationR5 -0.979 2.093 0.13524 0.54411
RegenerationR6 -1.095 2.093 0.21491 0.55876
RegenerationBL -0.728 2.093 0.99977 1.00000
RegenerationTP 0.143 2.093 0.99993 1.00000


Genes with expression patterns similar to MligTC455_11613

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11613 95 1.97 Mlig455_053792

Neo: -

Age: -

Region-enriched R5: 2.786/0.00237

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053792 {REF} {Length: 3305} {RNA1509_23777} {RNA1310_45506} {RNA815_24556}
2. MligTC455_11614 148 3.09 Mlig455_068545

Neo: -

Age: -

Region-enriched R5: 2.368/0.00056

 2.877 0.995 0.990 - - - 0.892 Mlig455_068545 {REF} {Length: 3259} {RNA1509_23777} {RNA1310_45506} {RNA815_24556}
3. MligTC455_20349 279 5.82 Mlig455_041565

Neo: Irradiation

Age: -

Region-enriched R5: 2.159/0.00003

 MAP2K1 2.489 0.815 0.704 - - - 0.970 Mlig455_041565 {REF} {Length: 3760} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=198.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=115.1]; ABC1 atypical kinase-like domain [PF03109.18, score=21.0]; Fungal protein kinase [PF17667.3, score=18.5]} {Human: ENSG00000169032, MAP2K1, mitogen-activated protein kinase kinase 1, [RH, Score=391, Expect=1e-133]} {Mouse: ENSMUSG00000004936, Map2k1, mitogen-activated protein kinase kinase 1, [RH, Score=390, Expect=1e-133]; ENSMUSG00000035027, Map2k2, mitogen-activated protein kinase kinase 2, [RH, Score=384, Expect=1e-130]} {Dmel: FBgn0010269, Dsor1, Downstream of raf1, [RH, Score=370, Expect=1e-125]} {Celegans: WBGene00003186, mek-2, Dual specificity mitogen-activated protein kinase kinase mek-2, [RH, Score=357, Expect=1e-120]} {Smed: dd_Smed_v6_3518_0_1, dd_Smed_v6_3518_0_1, [Score=436, Expect=2e-151]} {RNA1509_36417, RNA1509_8492} {RNA1310_10904, RNA1509_8492} {RNA1509_8492, RNA815_6072}
4. MligTC455_22774 156 3.25 Mlig455_045395

Neo: -

Age: -

Region-enriched R5: 2.504/0.00000

 1.749 - 0.780 - - - 0.969 Mlig455_045395 {REF} {Length: 3099} {Mouse: ENSMUSG00000030878, Cdr2, cerebellar degeneration-related 2, [Score=48.9, Expect=5e-06]} {Dmel: FBgn0032876, Cen, Centrocortin, [Score=64.7, Expect=4e-11]} {Smed: dd_Smed_v6_3478_0_1, dd_Smed_v6_3478_0_1, [Score=61.2, Expect=2e-10]} {RNA1310_40607} {RNA815_42744}
5. MligTC455_08693 14 0.29 Mlig455_050875

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_050875 {REF} {Length: 2336} {NoTransDecoderORF} {RNA1509_31497} {RNA1310_2120, RNA1509_31497} {RNA1509_31497, RNA815_30161}
6. MligTC455_47202 347 7.23 Mlig455_067347

Neo: -

Age: -

 0.971 - - 0.971 - - - Mlig455_067347 {REF} {Length: 3673} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=78.5]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=26.9]; C2H2-type zinc finger [PF13894.8, score=21.6]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=21.2]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=75.1, Expect=3e-13]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=131, Expect=9e-31]} {RNA1509_33943} {RNA1310_12382} {RNA815_29092}
7. MligTC455_21062 115 2.39 Mlig455_023244, Mlig455_026561, Mlig455_027394, Mlig455_028022, Mlig455_066349, Mlig455_067765

Neo: -

Age: -

 0.961 - - - 0.961 - -

Mlig455_023244 {REF} {Length: 4156} {RNA1509_51835} {RNA1310_29742} {RNA815_15908}

Mlig455_026561 {REF} {Length: 871} {RNA1509_51835} {RNA1310_29742} {RNA815_15908}

Mlig455_027394 {REF} {Length: 609} {RNA1509_51835} {RNA1310_99393} {RNA815_15908}

Mlig455_028022 {REF} {Length: 655} {TRANSSPLICED} {RNA1509_51835} {RNA1310_26578.1} {RNA815_15908}

Mlig455_066349 {REF} {Length: 2048} {RNA1509_51835} {RNA1310_47469} {RNA815_14090.1}

Mlig455_067765 {REF} {Length: 659} {Pfam: Phage integrase family [PF00589.24, score=40.6]} {RNA1509_34535} {RNA1310_33735.1} {RNA815_39170}
8. MligTC455_20693 210 4.37 Mlig455_002997, Mlig455_055600, Mlig455_066012

Neo: -

Age: -

Region-enriched R3: 4.111/0.00043
Region-enriched R5: 2.938/0.01894

 TMEM145 0.959 - - - 0.959 - -

Mlig455_002997 {REF} {Length: 4160} {Pfam: Rhodopsin-like GPCR transmembrane domain [PF10192.11, score=171.4]; Lung seven transmembrane receptor [PF06814.15, score=22.1]} {Human: ENSG00000167619, TMEM145, transmembrane protein 145, [RH, Score=237, Expect=4e-72]} {Mouse: ENSMUSG00000043843, Tmem145, transmembrane protein 145, [RH, Score=275, Expect=5e-86]} {Dmel: FBgn0034674, CG9304, [Score=65.5, Expect=5e-11]} {Celegans: WBGene00007595, C15A7.2, [RH, Score=223, Expect=1e-66]} {RNA1509_48535} {RNA1310_7178} {RNA815_2825}

Mlig455_055600 {REF} {Length: 3563} {Pfam: Rhodopsin-like GPCR transmembrane domain [PF10192.11, score=166.3]; Lung seven transmembrane receptor [PF06814.15, score=24.1]} {Human: ENSG00000167619, TMEM145, transmembrane protein 145, [RH, Score=237, Expect=5e-72]} {Mouse: ENSMUSG00000043843, Tmem145, transmembrane protein 145, [Score=272, Expect=1e-84]} {Dmel: FBgn0034674, CG9304, [Score=61.2, Expect=1e-09]} {Celegans: WBGene00007595, C15A7.2, [RH, Score=216, Expect=2e-64]} {RNA1509_48535} {RNA1310_7178} {RNA815_2825}

Mlig455_066012 {REF} {Length: 4598} {RNA1509_48535} {RNA1310_7178} {RNA815_2825}
9. MligTC455_09244 6 0.12 Mlig455_035325

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_035325 {REF} {Length: 369} {NoTransDecoderORF} {RNA1509_50625} {RNA1310_119855} {RNA815_42229}
10. MligTC455_12910 131 2.73 Mlig455_046581

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_046581 {REF} {Length: 790} {NoTransDecoderORF} {RNA1509_37367} {RNA1310_41038, RNA1509_37367}
11. MligTC455_19840 337 7.01 Mlig455_039418

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.622/0.00000

 ARHGAP11A 0.955 - - - - - 0.955 Mlig455_039418 {REF} {Length: 2442} {Pfam: RhoGAP domain [PF00620.29, score=115.3]} {Human: ENSG00000275568, ARHGAP11A, Rho GTPase activating protein 11A, [Score=115, Expect=2e-26]; ENSG00000198826, ARHGAP11A, Rho GTPase activating protein 11A, [Score=115, Expect=2e-26]; ENSG00000274734, ARHGAP11B, Rho GTPase activating protein 11B, [Score=112, Expect=2e-27]; ENSG00000284906, AC091057.6, Rho GTPase-activating protein 11B, [Score=112, Expect=2e-27]; ENSG00000285077, ARHGAP11B, Rho GTPase activating protein 11B, [Score=112, Expect=2e-27]; ENSG00000282168, ARHGAP11A, Rho GTPase activating protein 11A, [Score=112, Expect=5e-26]} {Mouse: ENSMUSG00000041219, Arhgap11a, Rho GTPase activating protein 11A, [Score=109, Expect=9e-25]} {Dmel: FBgn0038747, RhoGAP92B, Rho GTPase activating protein at 92B, [Score=75.5, Expect=5e-14]} {Celegans: WBGene00001559, gei-1, GEX Interacting protein, [Score=87.0, Expect=1e-17]} {Smed: dd_Smed_v6_6320_0_1, dd_Smed_v6_6320_0_1, [Score=89.4, Expect=7e-19]} {RNA1509_27307} {RNA1310_10799.1} {RNA815_24329}
12. MligTC455_15971 14 0.3 Mlig455_067895

Neo: -

Age: -

 RIMS1 0.954 - - - - 0.954 - Mlig455_067895 {REF} {Length: 5526} {Pfam: C2 domain [PF00168.32, score=97.8]; PDZ domain [PF00595.26, score=32.6]; PDZ domain [PF17820.3, score=32.5]} {Human: ENSG00000079841, RIMS1, regulating synaptic membrane exocytosis 1, [Score=219, Expect=7e-60]; ENSG00000176406, RIMS2, regulating synaptic membrane exocytosis 2, [Score=216, Expect=1e-56]} {Mouse: ENSMUSG00000037386, Rims2, regulating synaptic membrane exocytosis 2, [Score=220, Expect=1e-57]; ENSMUSG00000041670, Rims1, regulating synaptic membrane exocytosis 1, [Score=218, Expect=9e-59]; ENSMUSG00000111628, Rims1, regulating synaptic membrane exocytosis 1, [Score=218, Expect=9e-59]} {Dmel: FBgn0053547, Rim, Rab3 interacting molecule, [RH, Score=244, Expect=3e-65]} {Celegans: WBGene00006750, unc-10, Rab-3-interacting molecule unc-10, [RH, Score=184, Expect=1e-46]} {Smed: dd_Smed_v6_10734_0_1, dd_Smed_v6_10734_0_1, [Score=256, Expect=3e-71]} {RNA1509_24965} {RNA1310_16936.1} {RNA815_27117}
13. MligTC455_44141 30 0.62 Mlig455_031450

Neo: -

Age: -

 SGPP1 0.954 - - - - 0.954 - Mlig455_031450 {REF} {Length: 3193} {TRANSSPLICED} {Pfam: PAP2 superfamily [PF01569.23, score=66.5]; PAP2 superfamily [PF14378.8, score=22.6]} {Human: ENSG00000285281, SGPP1, sphingosine-1-phosphate phosphatase 1, [Score=257, Expect=1e-80]; ENSG00000126821, SGPP1, sphingosine-1-phosphate phosphatase 1, [Score=257, Expect=1e-80]} {Mouse: ENSMUSG00000021054, Sgpp1, sphingosine-1-phosphate phosphatase 1, [Score=256, Expect=1e-80]} {Smed: dd_Smed_v6_4050_0_1, dd_Smed_v6_4050_0_1, [Score=154, Expect=1e-42]} {RNA1509_26836} {RNA1310_22538} {RNA815_4160}
14. MligTC455_52434 16 0.33 Mlig455_051989

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_051989 {REF} {Length: 1802} {RNA1310_35019} {RNA815_8697}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA