M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11744

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11744 162 3.37 Mlig455_013182

Neo: -

Age: -

 Mlig455_013182 {REF} {Length: 788} {NoTransDecoderORF} {RNA1509_40433} {RNA1310_72412.2} {RNA815_64794}

Cumulative graph for MligTC455_11744

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.315 2.469 0.40177 1.00000
RegionR2 2.356 2.469 0.05284 0.27508
RegionR3 0.412 2.469 0.64650 1.00000
RegionR4 -3.131 2.469 0.02235 0.11030
RegionR5 -0.688 2.469 0.29521 0.62882
RegionR6 1.004 2.469 0.28157 0.87158
RegionR7 2.117 2.469 0.03207 0.34039
RegionR8 -0.755 2.469 0.83453 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.936 2.469 0.11729 0.84452
RegenerationR2 1.169 2.469 0.32542 0.76356
RegenerationR3 1.948 2.469 0.08538 0.47653
RegenerationR4 2.055 2.469 0.09614 0.48136
RegenerationR5 1.181 2.469 0.19509 0.62675
RegenerationR6 0.906 2.469 0.39068 0.73022
RegenerationBL -2.566 2.469 0.39977 0.76855
RegenerationTP -2.617 2.469 0.36169 0.80171


Genes with expression patterns similar to MligTC455_11744

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11744 162 3.37 Mlig455_013182

Neo: -

Age: -

 4 1.000 1.000 - - 1.000 1.000 Mlig455_013182 {REF} {Length: 788} {NoTransDecoderORF} {RNA1509_40433} {RNA1310_72412.2} {RNA815_64794}
2. MligTC455_11745 181 3.77 Mlig455_046002

Neo: -

Age: Up-Down-Up

 C2CD5 2.893 0.999 0.997 - - 0.897 - Mlig455_046002 {REF} {Length: 4677} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=83.0]; Putative heavy-metal-binding [PF01906.19, score=26.1]} {Human: ENSG00000111731, C2CD5, C2 calcium dependent domain containing 5, [RH, Score=606, Expect=0.0]} {Mouse: ENSMUSG00000030279, C2cd5, C2 calcium-dependent domain containing 5, [RH, Score=676, Expect=0.0]} {Dmel: FBgn0039187, CG6454, [RH, Score=585, Expect=0.0]} {Celegans: WBGene00018719, F52H2.7, [RH, Score=169, Expect=3e-43]} {Smed: dd_Smed_v6_12816_0_1, dd_Smed_v6_12816_0_1, [RH, Score=601, Expect=0.0]} {RNA1509_16685} {RNA1310_6672, RNA1509_16685} {RNA1509_16685, RNA815_2059}
3. MligTC455_16939 121 2.51 Mlig455_029567

Neo: Irradiation

Age: -

 0.958 - - - - - 0.958 Mlig455_029567 {REF} {Length: 3273} {Pfam: Methyltransferase domain [PF13383.8, score=84.0]; Methyltransferase FkbM domain [PF05050.14, score=40.6]} {Celegans: WBGene00017873, F28A10.5, [Score=52.8, Expect=3e-07]} {Smed: dd_Smed_v6_3107_0_1, dd_Smed_v6_3107_0_1, [Score=185, Expect=2e-53]} {RNA1509_5940} {RNA1310_10053.1, RNA1509_5940} {RNA1509_5940, RNA815_19723}
4. MligTC455_48440 124 2.57 Mlig455_070210

Neo: -

Age: -

Region-enriched R5: 2.564/0.01136

 LIPT1 0.954 - - - - - 0.954 Mlig455_070210 {REF} {Length: 2935} {TRANSSPLICED} {Pfam: Biotin/lipoate A/B protein ligase family [PF03099.21, score=19.2]} {Human: ENSG00000144182, LIPT1, lipoyltransferase 1, [RH, Score=160, Expect=8e-45]} {Mouse: ENSMUSG00000037216, Lipt1, lipoyltransferase 1, [RH, Score=156, Expect=1e-43]} {Dmel: FBgn0265178, CG44243, [RH, Score=141, Expect=8e-38]} {Celegans: WBGene00001590, C45G3.3, [RH, Score=149, Expect=3e-42]} {Smed: dd_Smed_v6_11214_0_1, dd_Smed_v6_11214_0_1, [RH, Score=116, Expect=2e-29]} {RNA1509_52657} {RNA1310_27851} {RNA815_10683.1}
5. MligTC455_25328 29 0.6 Mlig455_059750

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_059750 {REF} {Length: 1286} {RNA1509_59014} {RNA1310_69465.1} {RNA815_43258}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA