M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12295

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12295 166 3.46 Mlig455_024929, Mlig455_024963

Neo: S/G2/M, no gonads

Age: -

Mlig455_024929 {REF} {Length: 333} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44135} {RNA1310_106387, RNA1509_44135} {RNA1509_44135, RNA815_52946.1}

Mlig455_024963 {REF} {Length: 333} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44135} {RNA1310_106387} {RNA815_52946.1}

Cumulative graph for MligTC455_12295

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.405 2.683 0.99331 1.00000
RegionR2 0.966 2.683 0.45858 0.84569
RegionR3 0.168 2.683 0.73804 1.00000
RegionR4 2.351 2.683 0.02419 0.11658
RegionR5 1.688 2.683 0.06128 0.21645
RegionR6 0.141 2.683 0.75812 1.00000
RegionR7 1.629 2.683 0.13823 0.69664
RegionR8 -5.538 2.683 0.07181 0.51257

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.468 2.683 0.58987 1.00000
RegenerationR2 0.52 2.683 0.65748 0.93996
RegenerationR3 1.131 2.683 0.33044 0.75629
RegenerationR4 0.212 2.683 0.80372 0.98748
RegenerationR5 0.388 2.683 0.68185 0.94415
RegenerationR6 2.871 2.683 0.00892 0.11616
RegenerationBL -2.232 2.683 1.00000 1.00000
RegenerationTP 1.684 2.683 0.50255 0.90228


Genes with expression patterns similar to MligTC455_12295

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12295 166 3.46 Mlig455_024929, Mlig455_024963

Neo: S/G2/M, no gonads

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_024929 {REF} {Length: 333} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44135} {RNA1310_106387, RNA1509_44135} {RNA1509_44135, RNA815_52946.1}

Mlig455_024963 {REF} {Length: 333} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44135} {RNA1310_106387} {RNA815_52946.1}
2. MligTC455_40569 61 1.28 Mlig455_017404, Mlig455_017480, Mlig455_030913

Neo: -

Age: -

 NPY1R, SSTR1 1.776 - - 0.802 - 0.974 -

Mlig455_017404 {REF} {Length: 1831} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=98.6]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=38.4]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=30.8]} {Human: ENSG00000164128, NPY1R, neuropeptide Y receptor Y1, [Score=79.7, Expect=1e-15]; ENSG00000139874, SSTR1, somatostatin receptor 1, [Score=78.2, Expect=4e-15]} {Mouse: ENSMUSG00000035431, Sstr1, somatostatin receptor 1, [Score=79.0, Expect=1e-15]; ENSMUSG00000021799, Opn4, opsin 4 (melanopsin), [Score=78.6, Expect=3e-15]; ENSMUSG00000034987, Hrh2, histamine receptor H2, [Score=77.4, Expect=5e-15]; ENSMUSG00000036437, Npy1r, neuropeptide Y receptor Y1, [Score=76.6, Expect=9e-15]} {Dmel: FBgn0025631, moody, [Score=98.2, Expect=1e-21]} {Celegans: WBGene00009619, npr-6, NeuroPeptide Receptor family, [Score=96.3, Expect=1e-21]} {Smed: dd_Smed_v6_60821_0_1, dd_Smed_v6_60821_0_1, [RH, Score=244, Expect=6e-78]} {RNA1310_59077} {RNA815_40616}

Mlig455_017480 {REF} {Length: 2023} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=99.5]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=40.4]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=31.6]} {Human: ENSG00000139874, SSTR1, somatostatin receptor 1, [Score=79.7, Expect=2e-15]; ENSG00000164128, NPY1R, neuropeptide Y receptor Y1, [Score=79.3, Expect=2e-15]} {Mouse: ENSMUSG00000021799, Opn4, opsin 4 (melanopsin), [Score=82.0, Expect=3e-16]; ENSMUSG00000035431, Sstr1, somatostatin receptor 1, [Score=80.5, Expect=5e-16]; ENSMUSG00000034987, Hrh2, histamine receptor H2, [Score=80.1, Expect=9e-16]} {Dmel: FBgn0025631, moody, [Score=97.8, Expect=2e-21]} {Celegans: WBGene00009619, npr-6, NeuroPeptide Receptor family, [Score=95.9, Expect=2e-21]} {Smed: dd_Smed_v6_60821_0_1, dd_Smed_v6_60821_0_1, [RH, Score=248, Expect=5e-79]} {RNA1310_59077} {RNA815_40616}

Mlig455_030913 {REF} {Length: 2017} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=99.5]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=40.4]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=31.6]} {Human: ENSG00000139874, SSTR1, somatostatin receptor 1, [Score=79.7, Expect=2e-15]; ENSG00000164128, NPY1R, neuropeptide Y receptor Y1, [Score=79.3, Expect=2e-15]} {Mouse: ENSMUSG00000021799, Opn4, opsin 4 (melanopsin), [Score=82.0, Expect=3e-16]; ENSMUSG00000035431, Sstr1, somatostatin receptor 1, [Score=80.5, Expect=5e-16]; ENSMUSG00000034987, Hrh2, histamine receptor H2, [Score=80.1, Expect=9e-16]} {Dmel: FBgn0025631, moody, [Score=97.8, Expect=2e-21]} {Celegans: WBGene00009619, npr-6, NeuroPeptide Receptor family, [Score=95.9, Expect=2e-21]} {Smed: dd_Smed_v6_60821_0_1, dd_Smed_v6_60821_0_1, [RH, Score=248, Expect=5e-79]} {RNA1310_59077} {RNA815_40616}
3. MligTC455_38293 292 6.09 Mlig455_059605, Mlig455_070951

Neo: -

Age: -

 TUBD1 1.673 - - - - 0.950 0.723

Mlig455_059605 {REF} {Length: 2419} {TRANSSPLICED} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=149.3]; Tubulin like [PF13809.8, score=18.2]} {Human: ENSG00000108423, TUBD1, tubulin delta 1, [RH, Score=354, Expect=6e-118]} {Mouse: ENSMUSG00000020513, Tubd1, tubulin, delta 1, [RH, Score=354, Expect=5e-118]} {Dmel: FBgn0010097, gammaTub37C, gamma-Tubulin at 37C, [Score=134, Expect=3e-34]} {Celegans: WBGene00003171, mec-7, Tubulin beta-1 chain, [Score=134, Expect=2e-34]} {Smed: dd_Smed_v6_15819_0_4, dd_Smed_v6_15819_0_4, [RH, Score=321, Expect=1e-105]} {RNA1509_37116} {RNA1310_16834.1} {RNA815_17890}

Mlig455_070951 {REF} {Length: 4547} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=145.4]; Tubulin like [PF13809.8, score=18.2]} {Human: ENSG00000108423, TUBD1, tubulin delta 1, [RH, Score=354, Expect=4e-118]} {Mouse: ENSMUSG00000020513, Tubd1, tubulin, delta 1, [RH, Score=354, Expect=2e-118]} {Dmel: FBgn0010097, gammaTub37C, gamma-Tubulin at 37C, [Score=134, Expect=3e-34]} {Celegans: WBGene00003171, mec-7, Tubulin beta-1 chain, [Score=131, Expect=1e-33]} {Smed: dd_Smed_v6_15819_0_4, dd_Smed_v6_15819_0_4, [RH, Score=321, Expect=6e-106]} {RNA1509_37116} {RNA1310_16834.1} {RNA815_17890}
4. MligTC455_11274 19 0.39 Mlig455_060650

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_060650 {REF} {Length: 656} {NoTransDecoderORF} {RNA1310_80809} {RNA815_48400}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA