M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_12519

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_12519 7 0.16 Mlig455_023616

Neo: -

Age: -

 Mlig455_023616 {REF} {Length: 586} {RNA1509_22223} {RNA1310_60769} {RNA815_31256}

Cumulative graph for MligTC455_12519

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_12519

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_12519 7 0.16 Mlig455_023616

Neo: -

Age: -

 2 1.000 1.000 - - - - Mlig455_023616 {REF} {Length: 586} {RNA1509_22223} {RNA1310_60769} {RNA815_31256}
2. MligTC455_04567 12 0.24 Mlig455_024759

Neo: -

Age: -

 1.959 0.974 0.985 - - - - Mlig455_024759 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_22223} {RNA1310_37847} {RNA815_35350}
3. MligTC455_04568 12 0.26 Mlig455_058315

Neo: -

Age: -

 1.959 0.974 0.985 - - - - Mlig455_058315 {REF} {Length: 385} {NoTransDecoderORF} {RNA1509_22223} {RNA1310_37847} {RNA815_35350}
4. MligTC455_11004 32 0.67 Mlig455_054795, Mlig455_054889

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.411

 1.827 0.873 0.954 - - - -

Mlig455_054795 {REF} {Length: 1436} {RNA1509_22234, RNA1509_40720} {RNA1310_32042, RNA1509_22234} {RNA1509_22234, RNA815_14622}

Mlig455_054889 {REF} {Length: 1375} {RNA1509_22234} {RNA1310_32042} {RNA815_14622}
5. MligTC455_12520 17 0.35 Mlig455_046525

Neo: -

Age: -

 0.977 - 0.977 - - - - Mlig455_046525 {REF} {Length: 409} {NoTransDecoderORF} {RNA1509_22223} {RNA1310_64463} {RNA815_31256}
6. MligTC455_37299 18 0.37 Mlig455_064096

Neo: -

Age: -

 0.977 0.977 - - - - - Mlig455_064096 {REF} {Length: 2004} {RNA1509_17085, RNA1509_26852, RNA1509_32701} {RNA1310_33260, RNA1509_17085, RNA1509_26852, RNA1509_32701} {RNA1509_17085, RNA1509_26852, RNA1509_32701, RNA815_22090}
7. MligTC455_27576 11 0.23 Mlig455_006736

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.495

 SCNN1G 0.976 0.976 - - - - - Mlig455_006736 {REF} {Length: 1992} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=195.4]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=80.1, Expect=3e-15]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=76.3, Expect=3e-14]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=74.3, Expect=7e-14]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=90.5, Expect=4e-19]} {RNA1509_36956} {RNA1310_12232.1} {RNA815_4577.1}
8. MligTC455_07664 24 0.5 Mlig455_064623

Neo: -

Age: Up-Down-Up

Region-enriched R4: 6.384/0.04488

 0.972 0.972 - - - - - Mlig455_064623 {REF} {Length: 1185} {RNA1509_46159} {RNA1310_67983} {RNA815_26425}
9. MligTC455_06370 8 0.16 Mlig455_030093

Neo: -

Age: -

 0.971 0.971 - - - - - Mlig455_030093 {REF} {Length: 502} {NoTransDecoderORF}
10. MligTC455_06461 11 0.23 Mlig455_020817

Neo: Int S/G2/M

Age: -

 0.971 0.971 - - - - - Mlig455_020817 {REF} {Length: 1668} {RNA1310_61790} {RNA815_43659}
11. MligTC455_05806 27 0.55 Mlig455_063629

Neo: -

Age: -

 0.97 - 0.970 - - - - Mlig455_063629 {REF} {Length: 186} {NoTransDecoderORF} {RNA1310_40474} {RNA815_44080}
12. MligTC455_10984 37 0.77 Mlig455_022539, Mlig455_022580

Neo: -

Age: -

 0.969 0.969 - - - - -

Mlig455_022539 {REF} {Length: 307} {NoTransDecoderORF} {RNA1310_32406} {RNA815_44793}

Mlig455_022580 {REF} {Length: 460} {NoTransDecoderORF} {RNA1310_32406} {RNA815_44793}
13. MligTC455_12309 17 0.36 Mlig455_043008

Neo: Irradiation

Age: Up-Down-Down

 ABCA10 0.967 - 0.967 - - - - Mlig455_043008 {REF} {Length: 5813} {Pfam: ABC transporter [PF00005.29, score=175.6]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=76.3]; ABC-2 family transporter protein [PF12698.9, score=38.5]; AAA domain [PF13476.8, score=29.2]; AAA ATPase domain [PF13175.8, score=28.6]; RsgA GTPase [PF03193.18, score=27.5]; NB-ARC domain [PF00931.24, score=24.9]; AAA domain [PF13401.8, score=24.0]; P-loop containing region of AAA domain [PF13555.8, score=23.9]; AAA domain [PF13604.8, score=23.9]; AAA ATPase domain [PF13191.8, score=22.9]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.9]} {Human: ENSG00000154263, ABCA10, ATP binding cassette subfamily A member 10, [Score=236, Expect=3e-62]; ENSG00000154258, ABCA9, ATP binding cassette subfamily A member 9, [Score=226, Expect=5e-59]; ENSG00000141338, ABCA8, ATP binding cassette subfamily A member 8, [Score=225, Expect=1e-58]} {Mouse: ENSMUSG00000041828, Abca8a, ATP-binding cassette, sub-family A (ABC1), member 8a, [Score=223, Expect=6e-58]; ENSMUSG00000020620, Abca8b, ATP-binding cassette, sub-family A (ABC1), member 8b, [Score=215, Expect=1e-55]} {Dmel: FBgn0031170, CG1718, [Score=185, Expect=1e-46]} {Celegans: WBGene00000421, ced-7, ABC transporter ced-7, [Score=295, Expect=9e-81]} {Smed: dd_Smed_v6_10304_0_1, dd_Smed_v6_10304_0_1, [Score=176, Expect=4e-44]} {RNA1509_6974} {RNA1310_809} {RNA815_234.1}
14. MligTC455_26762 9 0.19 Mlig455_019887

Neo: -

Age: -

 0.966 0.966 - - - - - Mlig455_019887 {REF} {Length: 889} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_8804} {RNA1310_21198} {RNA815_23479}
15. MligTC455_00888 3 0.06 Mlig455_059207

Neo: -

Age: -

 0.964 0.964 - - - - - Mlig455_059207 {REF} {Length: 445} {RNA1509_58911} {RNA1310_15517} {RNA815_34202}
16. MligTC455_14574 11 0.23 Mlig455_066604

Neo: -

Age: -

 0.964 0.964 - - - - - Mlig455_066604 {REF} {Length: 1066} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=55.5, Expect=6e-10]} {RNA1310_44360} {RNA815_47498}
17. MligTC455_33048 7 0.16 Mlig455_007401

Neo: -

Age: -

 0.964 0.964 - - - - - Mlig455_007401 {REF} {Length: 317} {NoTransDecoderORF} {RNA815_19248}
18. MligTC455_36430 11 0.24 Mlig455_026485

Neo: Int S/G2/M

Age: -

 0.963 0.963 - - - - - Mlig455_026485 {REF} {Length: 1134} {NoTransDecoderORF} {RNA1509_19049} {RNA1310_10356.1} {RNA815_21371.1}
19. MligTC455_07147 7 0.15 Mlig455_013813

Neo: -

Age: -

 0.959 0.959 - - - - - Mlig455_013813 {REF} {Length: 1376} {Pfam: Glycine rich protein [PF12810.9, score=41.1]} {RNA1310_68840} {RNA815_35307}
20. MligTC455_49967 10 0.21 Mlig455_065978

Neo: Irradiation

Age: Up-Down-Down

 KLHL10 0.958 0.958 - - - - - Mlig455_065978 {REF} {Length: 2385} {Pfam: Kelch motif [PF01344.27, score=116.0]; Kelch motif [PF13964.8, score=58.6]; BTB And C-terminal Kelch [PF07707.17, score=51.5]; Galactose oxidase, central domain [PF13415.8, score=45.3]; Kelch motif [PF07646.17, score=44.7]; Galactose oxidase, central domain [PF13418.8, score=37.2]; Kelch motif [PF13854.8, score=24.2]} {Human: ENSG00000161594, KLHL10, kelch like family member 10, [Score=144, Expect=7e-36]} {Mouse: ENSMUSG00000001558, Klhl10, kelch-like 10, [Score=146, Expect=1e-36]} {Dmel: FBgn0040038, klhl10, kelch like family member 10, [Score=136, Expect=5e-33]} {Celegans: WBGene00002185, kel-3, KELch-repeat containing protein, [Score=109, Expect=9e-25]} {Smed: dd_Smed_v6_5640_0_1, dd_Smed_v6_5640_0_1, [Score=116, Expect=4e-27]} {RNA1509_22564} {RNA1310_3065} {RNA815_20921}
21. MligTC455_31357 65 1.35 Mlig455_061935

Neo: -

Age: Down-Down-Up

Region-enriched R4: 4.777/0.01656

 0.957 0.957 - - - - - Mlig455_061935 {REF} {Length: 2914} {RNA1509_52597} {RNA1310_48892} {RNA815_12608.1}
22. MligTC455_07890 39 0.81 Mlig455_025968

Neo: -

Age: -

Regeneration-downregulated R4: -5.998

Regeneration-depleted R4: -5.998

 0.95 0.950 - - - - - Mlig455_025968 {REF} {Length: 244} {NoTransDecoderORF} {RNA1509_47328} {RNA1310_29900} {RNA815_13457}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA