TomoSeq data search

Data search

Results for MligTC455_12944

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_12944	182	3.78	Mlig455_008178, Mlig455_008218	Neo: Int S/G2/M Age: Up-Down-Up, logFC(26M/2M)=0.412	REV1	Mlig455_008178 {REF} {Length: 4360} {TRANSSPLICED} {Pfam: impB/mucB/samB family [PF00817.22, score=137.1]; impB/mucB/samB family C-terminal domain [PF11799.10, score=53.2]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=36.1]; IMS family HHH motif [PF11798.10, score=28.2]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=23.7]; DNA ligase 3 BRCT domain [PF16759.7, score=22.6]; Ubiquitin binding region [PF14377.8, score=20.6]} {Human: ENSG00000135945, REV1, REV1, DNA directed polymerase, [RH, Score=405, Expect=2e-120]} {Mouse: ENSMUSG00000026082, Rev1, REV1, DNA directed polymerase, [RH, Score=396, Expect=1e-117]} {Dmel: FBgn0035150, Rev1, [RH, Score=412, Expect=1e-125]} {Celegans: WBGene00014066, rev-1, DNA repair protein REV1, [RH, Score=316, Expect=1e-90]} {Smed: dd_Smed_v6_5397_0_4, dd_Smed_v6_5397_0_4, [RH, Score=424, Expect=5e-132]} {RNA1509_54364} {RNA1310_7221, RNA1509_54364} {RNA1509_54364, RNA815_26642} Mlig455_008218 {REF} {Length: 4286} {TRANSSPLICED} {Pfam: impB/mucB/samB family [PF00817.22, score=136.4]; impB/mucB/samB family C-terminal domain [PF11799.10, score=53.1]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=36.2]; IMS family HHH motif [PF11798.10, score=28.3]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=23.7]; DNA ligase 3 BRCT domain [PF16759.7, score=22.6]; Ubiquitin binding region [PF14377.8, score=20.9]} {Human: ENSG00000135945, REV1, REV1, DNA directed polymerase, [RH, Score=408, Expect=7e-122]} {Mouse: ENSMUSG00000026082, Rev1, REV1, DNA directed polymerase, [RH, Score=400, Expect=5e-119]} {Dmel: FBgn0035150, Rev1, [RH, Score=413, Expect=3e-126]} {Celegans: WBGene00014066, rev-1, DNA repair protein REV1, [RH, Score=313, Expect=5e-90]} {Smed: dd_Smed_v6_5397_0_4, dd_Smed_v6_5397_0_4, [RH, Score=425, Expect=2e-132]} {RNA1509_54364} {RNA1310_7221} {RNA815_26642}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_12944

182

3.78

Mlig455_008178, Mlig455_008218

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.412

REV1

Mlig455_008178 {REF} {Length: 4360} {TRANSSPLICED} {Pfam: impB/mucB/samB family [PF00817.22, score=137.1]; impB/mucB/samB family C-terminal domain [PF11799.10, score=53.2]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=36.1]; IMS family HHH motif [PF11798.10, score=28.2]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=23.7]; DNA ligase 3 BRCT domain [PF16759.7, score=22.6]; Ubiquitin binding region [PF14377.8, score=20.6]} {Human: ENSG00000135945, REV1, REV1, DNA directed polymerase, [RH, Score=405, Expect=2e-120]} {Mouse: ENSMUSG00000026082, Rev1, REV1, DNA directed polymerase, [RH, Score=396, Expect=1e-117]} {Dmel: FBgn0035150, Rev1, [RH, Score=412, Expect=1e-125]} {Celegans: WBGene00014066, rev-1, DNA repair protein REV1, [RH, Score=316, Expect=1e-90]} {Smed: dd_Smed_v6_5397_0_4, dd_Smed_v6_5397_0_4, [RH, Score=424, Expect=5e-132]} {RNA1509_54364} {RNA1310_7221, RNA1509_54364} {RNA1509_54364, RNA815_26642}

Mlig455_008218 {REF} {Length: 4286} {TRANSSPLICED} {Pfam: impB/mucB/samB family [PF00817.22, score=136.4]; impB/mucB/samB family C-terminal domain [PF11799.10, score=53.1]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=36.2]; IMS family HHH motif [PF11798.10, score=28.3]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=23.7]; DNA ligase 3 BRCT domain [PF16759.7, score=22.6]; Ubiquitin binding region [PF14377.8, score=20.9]} {Human: ENSG00000135945, REV1, REV1, DNA directed polymerase, [RH, Score=408, Expect=7e-122]} {Mouse: ENSMUSG00000026082, Rev1, REV1, DNA directed polymerase, [RH, Score=400, Expect=5e-119]} {Dmel: FBgn0035150, Rev1, [RH, Score=413, Expect=3e-126]} {Celegans: WBGene00014066, rev-1, DNA repair protein REV1, [RH, Score=313, Expect=5e-90]} {Smed: dd_Smed_v6_5397_0_4, dd_Smed_v6_5397_0_4, [RH, Score=425, Expect=2e-132]} {RNA1509_54364} {RNA1310_7221} {RNA815_26642}

Cumulative graph for MligTC455_12944

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.202	2.632	0.90200	1.00000
RegionR2	0.399	2.632	0.57213	0.93098
RegionR3	0.347	2.632	0.51286	1.00000
RegionR4	0.283	2.632	0.66233	0.96148
RegionR5	-0.166	2.632	0.74093	1.00000
RegionR6	-0.545	2.632	0.37674	0.95694
RegionR7	0.627	2.632	0.39627	1.00000
RegionR8	-1.147	2.632	0.37934	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-5.572	2.632	0.30214	0.99791
RegenerationR2	-0.692	2.632	0.20358	0.65039
RegenerationR3	-0.463	2.632	0.42481	0.81810
RegenerationR4	-0.686	2.632	0.25227	0.70081
RegenerationR5	0.033	2.632	0.95822	1.00000
RegenerationR6	0.105	2.632	0.87817	1.00000
RegenerationBL	-0.497	2.632	0.63065	0.97196
RegenerationTP	-0.215	2.632	0.84597	1.00000

Genes with expression patterns similar to MligTC455_12944

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_12944	182	3.78	Mlig455_008178, Mlig455_008218	Neo: Int S/G2/M Age: Up-Down-Up, logFC(26M/2M)=0.412	REV1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_008178 {REF} {Length: 4360} {TRANSSPLICED} {Pfam: impB/mucB/samB family [PF00817.22, score=137.1]; impB/mucB/samB family C-terminal domain [PF11799.10, score=53.2]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=36.1]; IMS family HHH motif [PF11798.10, score=28.2]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=23.7]; DNA ligase 3 BRCT domain [PF16759.7, score=22.6]; Ubiquitin binding region [PF14377.8, score=20.6]} {Human: ENSG00000135945, REV1, REV1, DNA directed polymerase, [RH, Score=405, Expect=2e-120]} {Mouse: ENSMUSG00000026082, Rev1, REV1, DNA directed polymerase, [RH, Score=396, Expect=1e-117]} {Dmel: FBgn0035150, Rev1, [RH, Score=412, Expect=1e-125]} {Celegans: WBGene00014066, rev-1, DNA repair protein REV1, [RH, Score=316, Expect=1e-90]} {Smed: dd_Smed_v6_5397_0_4, dd_Smed_v6_5397_0_4, [RH, Score=424, Expect=5e-132]} {RNA1509_54364} {RNA1310_7221, RNA1509_54364} {RNA1509_54364, RNA815_26642} Mlig455_008218 {REF} {Length: 4286} {TRANSSPLICED} {Pfam: impB/mucB/samB family [PF00817.22, score=136.4]; impB/mucB/samB family C-terminal domain [PF11799.10, score=53.1]; BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=36.2]; IMS family HHH motif [PF11798.10, score=28.3]; BRCA1 C Terminus (BRCT) domain [PF00533.28, score=23.7]; DNA ligase 3 BRCT domain [PF16759.7, score=22.6]; Ubiquitin binding region [PF14377.8, score=20.9]} {Human: ENSG00000135945, REV1, REV1, DNA directed polymerase, [RH, Score=408, Expect=7e-122]} {Mouse: ENSMUSG00000026082, Rev1, REV1, DNA directed polymerase, [RH, Score=400, Expect=5e-119]} {Dmel: FBgn0035150, Rev1, [RH, Score=413, Expect=3e-126]} {Celegans: WBGene00014066, rev-1, DNA repair protein REV1, [RH, Score=313, Expect=5e-90]} {Smed: dd_Smed_v6_5397_0_4, dd_Smed_v6_5397_0_4, [RH, Score=425, Expect=2e-132]} {RNA1509_54364} {RNA1310_7221} {RNA815_26642}
2.	MligTC455_43302	297	6.19	Mlig455_001798	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.756		1.713	-	-	-	0.960	-	0.753	Mlig455_001798 {REF} {Length: 2162} {RNA1509_14667} {RNA1310_23413, RNA1509_14667} {RNA1509_14667, RNA815_13658}
3.	MligTC455_49789	85	1.77	Mlig455_033540	Neo: - Age: Up-Up-Down Region-enriched R5: 3.704/0.00008	TRIM2	0.971	-	-	-	0.971	-	-	Mlig455_033540 {REF} {Length: 4183} {Pfam: NHL repeat [PF01436.23, score=48.9]; Filamin/ABP280 repeat [PF00630.21, score=33.2]; SMP-30/Gluconolactonase/LRE-like region [PF08450.14, score=29.4]; RING-type zinc-finger [PF13445.8, score=26.1]; zinc-RING finger domain [PF14634.8, score=25.3]; B-box zinc finger [PF00643.26, score=21.8]; Ring finger domain [PF13639.8, score=20.8]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=152, Expect=6e-38]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=150, Expect=1e-37]} {Dmel: FBgn0031999, CG8419, [RH, Score=59.7, Expect=8e-09]} {Celegans: WBGene00003599, nhl-3, NHL (Ring finger b-box coiled coil) domain containing, [Score=304, Expect=4e-93]} {RNA1509_46302, RNA1509_58017} {RNA1310_9321, RNA1509_46302, RNA1509_58017} {RNA1509_46302, RNA1509_58017, RNA815_20657}
4.	MligTC455_00896	211	4.39	Mlig455_055737	Neo: - Age: -	CRYM	0.961	-	-	-	-	0.961	-	Mlig455_055737 {REF} {Length: 2088} {TRANSSPLICED} {Pfam: Ornithine cyclodeaminase/mu-crystallin family [PF02423.17, score=215.0]; Shikimate / quinate 5-dehydrogenase [PF01488.22, score=21.0]} {Human: ENSG00000283922, CRYM, crystallin mu, [RH, Score=214, Expect=5e-67]; ENSG00000103316, CRYM, crystallin mu, [RH, Score=214, Expect=5e-67]} {Mouse: ENSMUSG00000030905, Crym, crystallin, mu, [RH, Score=223, Expect=6e-71]} {Dmel: FBgn0030799, CG4872, [RH, Score=115, Expect=3e-29]} {RNA1509_56637} {RNA1310_29132} {RNA815_47373}
5.	MligTC455_47045	33	0.69	Mlig455_053107	Neo: - Age: -		0.959	-	-	-	0.959	-	-	Mlig455_053107 {REF} {Length: 493} {TRANSSPLICED} {RNA1509_56604} {RNA1310_60152.1} {RNA815_39626}
6.	MligTC455_32300	256	5.34	Mlig455_036534	Neo: - Age: - Region-enriched R2: 2.018/0.04615		0.956	-	-	0.956	-	-	-	Mlig455_036534 {REF} {Length: 3738} {TRANSSPLICED} {Smed: dd_Smed_v6_5953_0_1, dd_Smed_v6_5953_0_1, [Score=88.2, Expect=4e-20]} {RNA1509_24553, RNA1509_27954} {RNA1310_25241.1, RNA1509_24553, RNA1509_27954} {RNA1509_24553, RNA1509_27954, RNA815_10356}