TomoSeq data search

Data search

Results for MligTC455_13194

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_13194	24	0.50	Mlig455_005720	Neo: - Age: -	CHRNB3	Mlig455_005720 {REF} {Length: 3708} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=147.2]; Domain of unknown function (DUF4524) [PF15025.8, score=76.3]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=59.7]; Domain of unknown function (DUF4520) [PF15016.8, score=46.9]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=174, Expect=3e-46]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=173, Expect=9e-45]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=173, Expect=2e-45]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=171, Expect=6e-45]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=170, Expect=1e-44]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=168, Expect=8e-44]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=178, Expect=8e-48]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=177, Expect=4e-47]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=177, Expect=4e-47]; ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=172, Expect=2e-44]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=170, Expect=2e-44]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=179, Expect=8e-48]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=176, Expect=6e-47]} {Smed: dd_Smed_v6_2019_0_1, dd_Smed_v6_2019_0_1, [Score=331, Expect=3e-103]} {RNA1509_44158} {RNA1310_14655.1} {RNA815_5441}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_13194

0.50

Mlig455_005720

Neo: -

Age: -

CHRNB3

Mlig455_005720 {REF} {Length: 3708} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=147.2]; Domain of unknown function (DUF4524) [PF15025.8, score=76.3]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=59.7]; Domain of unknown function (DUF4520) [PF15016.8, score=46.9]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=174, Expect=3e-46]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=173, Expect=9e-45]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=173, Expect=2e-45]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=171, Expect=6e-45]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=170, Expect=1e-44]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=168, Expect=8e-44]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=178, Expect=8e-48]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=177, Expect=4e-47]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=177, Expect=4e-47]; ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=172, Expect=2e-44]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=170, Expect=2e-44]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=179, Expect=8e-48]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=176, Expect=6e-47]} {Smed: dd_Smed_v6_2019_0_1, dd_Smed_v6_2019_0_1, [Score=331, Expect=3e-103]} {RNA1509_44158} {RNA1310_14655.1} {RNA815_5441}

Cumulative graph for MligTC455_13194

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.249	0.794	0.99928	1.00000
RegionR2	1.213	0.794	0.99958	1.00000
RegionR3	0.343	0.794	0.99929	1.00000
RegionR4	-1.305	0.794	0.99942	1.00000
RegionR5	-0.233	0.794	0.99933	1.00000
RegionR6	0.168	0.794	0.99925	1.00000
RegionR7	0.486	0.794	1.00000	1.00000
RegionR8	0.577	0.794	0.99926	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.788	0.794	0.99928	1.00000
RegenerationR2	2.45	0.794	0.32865	0.76651
RegenerationR3	2.929	0.794	0.39251	0.79752
RegenerationR4	3.035	0.794	0.40234	0.81482
RegenerationR5	2.207	0.794	0.44693	0.82876
RegenerationR6	3.998	0.794	0.34047	0.68629
RegenerationBL	2.389	0.794	0.44611	0.81338
RegenerationTP	4.772	0.794	0.33757	0.78134

Genes with expression patterns similar to MligTC455_13194

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_13194	24	0.5	Mlig455_005720	Neo: - Age: -	CHRNB3	1	-	-	-	-	1.000	-	Mlig455_005720 {REF} {Length: 3708} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=147.2]; Domain of unknown function (DUF4524) [PF15025.8, score=76.3]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=59.7]; Domain of unknown function (DUF4520) [PF15016.8, score=46.9]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=174, Expect=3e-46]; ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=173, Expect=9e-45]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=173, Expect=2e-45]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=171, Expect=6e-45]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=170, Expect=1e-44]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=168, Expect=8e-44]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=178, Expect=8e-48]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=177, Expect=4e-47]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=177, Expect=4e-47]; ENSMUSG00000027577, Chrna4, cholinergic receptor, nicotinic, alpha polypeptide 4, [Score=172, Expect=2e-44]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=170, Expect=2e-44]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=179, Expect=8e-48]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=176, Expect=6e-47]} {Smed: dd_Smed_v6_2019_0_1, dd_Smed_v6_2019_0_1, [Score=331, Expect=3e-103]} {RNA1509_44158} {RNA1310_14655.1} {RNA815_5441}
2.	MligTC455_30775	190	3.95	Mlig455_050445	Neo: Int S/G2/M Age: -		0.97	-	-	-	-	0.970	-	Mlig455_050445 {REF} {Length: 1566} {RNA1509_49830} {RNA1310_44065.1} {RNA815_31243}
3.	MligTC455_47323	345	7.19	Mlig455_048949	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_048949 {REF} {Length: 797} {RNA1509_56237} {RNA1310_17381} {RNA815_10247}
4.	MligTC455_40184	660	13.74	Mlig455_004167, Mlig455_004192	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.655		0.956	-	-	-	-	0.956	-	Mlig455_004167 {REF} {Length: 1157} {RNA1509_29172, RNA1509_51059} {RNA1310_10204, RNA1509_29172, RNA1509_51059} {RNA1509_29172, RNA1509_51059, RNA815_19579} Mlig455_004192 {REF} {Length: 887} {RNA1509_51059, RNA1509_60087} {RNA1310_10204, RNA1509_60087} {RNA1509_60087, RNA815_19579}
5.	MligTC455_07523	37	0.76	Mlig455_009295	Neo: - Age: -		0.954	-	-	-	-	0.954	-	Mlig455_009295 {REF} {Length: 527} {NoTransDecoderORF} {RNA1509_54671} {RNA1310_20601} {RNA815_6311.1}
6.	MligTC455_31323	119	2.48	Mlig455_064684	Neo: - Age: -	ACP2	0.954	-	-	-	-	0.954	-	Mlig455_064684 {REF} {Length: 3113} {TRANSSPLICED} {Pfam: Histidine phosphatase superfamily (branch 2) [PF00328.24, score=78.1]} {Human: ENSG00000134575, ACP2, acid phosphatase 2, lysosomal, [Score=179, Expect=4e-51]} {Mouse: ENSMUSG00000002103, Acp2, acid phosphatase 2, lysosomal, [Score=185, Expect=3e-53]} {Dmel: FBgn0000032, Acph-1, Acid phosphatase 1, [Score=173, Expect=6e-49]} {Celegans: WBGene00015161, pho-5, Putative acid phosphatase 5, [RH, Score=169, Expect=9e-48]} {Smed: dd_Smed_v6_11594_0_1, dd_Smed_v6_11594_0_1, [RH, Score=179, Expect=6e-51]} {RNA1509_29407} {RNA1310_15922, RNA1509_29407} {RNA1509_29407, RNA815_8033}
7.	MligTC455_22067	76	1.59	Mlig455_001752, Mlig455_001775	Neo: Irradiation Age: Up-Down-Down Region-enriched R5: 4.257/0.00021	NANOS1	0.951	-	-	-	-	0.951	-	Mlig455_001752 {REF} {Length: 2806} {Pfam: Nanos RNA binding domain [PF05741.15, score=79.7]} {Human: ENSG00000188613, NANOS1, nanos C2HC-type zinc finger 1, [RH, Score=82.4, Expect=2e-17]; ENSG00000188425, NANOS2, nanos C2HC-type zinc finger 2, [RH, Score=81.6, Expect=2e-18]} {Mouse: ENSMUSG00000072437, Nanos1, nanos C2HC-type zinc finger 1, [RH, Score=83.2, Expect=5e-18]; ENSMUSG00000051965, Nanos2, nanos C2HC-type zinc finger 2, [RH, Score=79.3, Expect=1e-17]} {Dmel: FBgn0002962, nos, Nitric oxide synthase, [Score=74.7, Expect=9e-15]} {Smed: dd_Smed_v6_10484_0_1, dd_Smed_v6_10484_0_1, [RH, Score=114, Expect=6e-30]} {RNA1310_14325} {RNA815_45506} Mlig455_001775 {REF} {Length: 2572} {Pfam: Nanos RNA binding domain [PF05741.15, score=79.5]} {Human: ENSG00000188613, NANOS1, nanos C2HC-type zinc finger 1, [RH, Score=82.4, Expect=3e-17]; ENSG00000188425, NANOS2, nanos C2HC-type zinc finger 2, [RH, Score=81.6, Expect=3e-18]} {Mouse: ENSMUSG00000072437, Nanos1, nanos C2HC-type zinc finger 1, [RH, Score=83.2, Expect=1e-17]; ENSMUSG00000051965, Nanos2, nanos C2HC-type zinc finger 2, [RH, Score=79.7, Expect=1e-17]} {Dmel: FBgn0002962, nos, Nitric oxide synthase, [Score=73.9, Expect=3e-14]} {Smed: dd_Smed_v6_10484_0_1, dd_Smed_v6_10484_0_1, [RH, Score=113, Expect=3e-29]} {RNA1310_14325} {RNA815_51586}
8.	MligTC455_24631	8516	177.42	Mlig455_021282	Neo: Int S/G2/M Age: logFC(26M/2M)=8.536		0.951	-	-	-	-	0.951	-	Mlig455_021282 {REF} {Length: 304} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_363} {RNA1310_113178.2} {RNA815_52026}