TomoSeq data search

Data search

Results for MligTC455_13346

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_13346	277	5.76	Mlig455_056526	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.458	TRIM2	Mlig455_056526 {REF} {Length: 3285} {Pfam: NHL repeat [PF01436.23, score=105.5]; 6-bladed beta-propeller [PF17170.6, score=32.1]; Filamin/ABP280 repeat [PF00630.21, score=28.0]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=357, Expect=4e-113]; ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=343, Expect=5e-109]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=357, Expect=6e-113]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=341, Expect=3e-107]} {Dmel: FBgn0265356, tn, thin, [Score=142, Expect=5e-35]} {Celegans: WBGene00003026, lin-41, [Score=101, Expect=6e-22]} {Smed: dd_Smed_v6_12812_0_1, dd_Smed_v6_12812_0_1, [Score=213, Expect=7e-62]} {RNA1509_30200, RNA1509_51980} {RNA1310_10977.1, RNA1509_30200, RNA1509_51980} {RNA1509_30200, RNA1509_51980, RNA815_30620}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_13346

277

5.76

Mlig455_056526

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.458

TRIM2

Mlig455_056526 {REF} {Length: 3285} {Pfam: NHL repeat [PF01436.23, score=105.5]; 6-bladed beta-propeller [PF17170.6, score=32.1]; Filamin/ABP280 repeat [PF00630.21, score=28.0]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=357, Expect=4e-113]; ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=343, Expect=5e-109]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=357, Expect=6e-113]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=341, Expect=3e-107]} {Dmel: FBgn0265356, tn, thin, [Score=142, Expect=5e-35]} {Celegans: WBGene00003026, lin-41, [Score=101, Expect=6e-22]} {Smed: dd_Smed_v6_12812_0_1, dd_Smed_v6_12812_0_1, [Score=213, Expect=7e-62]} {RNA1509_30200, RNA1509_51980} {RNA1310_10977.1, RNA1509_30200, RNA1509_51980} {RNA1509_30200, RNA1509_51980, RNA815_30620}

Cumulative graph for MligTC455_13346

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-6.235	2.968	0.11507	0.70198
RegionR2	1.799	2.968	0.03493	0.21447
RegionR3	0.769	2.968	0.37948	0.91185
RegionR4	-0.668	2.968	0.97039	1.00000
RegionR5	-1.153	2.968	0.99114	1.00000
RegionR6	1.899	2.968	0.00470	0.10505
RegionR7	1.944	2.968	0.01457	0.21721
RegionR8	1.644	2.968	0.09673	0.58699

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.413	2.968	0.99993	1.00000
RegenerationR2	-0.931	2.968	0.07779	0.45060
RegenerationR3	0.019	2.968	0.97185	1.00000
RegenerationR4	-0.43	2.968	0.53316	0.88545
RegenerationR5	0.793	2.968	0.22589	0.65991
RegenerationR6	-0.737	2.968	0.20777	0.55057
RegenerationBL	-1.655	2.968	0.03869	0.22313
RegenerationTP	-0.615	2.968	0.40170	0.83037

Genes with expression patterns similar to MligTC455_13346

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_13346	277	5.76	Mlig455_056526	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.458	TRIM2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_056526 {REF} {Length: 3285} {Pfam: NHL repeat [PF01436.23, score=105.5]; 6-bladed beta-propeller [PF17170.6, score=32.1]; Filamin/ABP280 repeat [PF00630.21, score=28.0]} {Human: ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=357, Expect=4e-113]; ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=343, Expect=5e-109]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=357, Expect=6e-113]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=341, Expect=3e-107]} {Dmel: FBgn0265356, tn, thin, [Score=142, Expect=5e-35]} {Celegans: WBGene00003026, lin-41, [Score=101, Expect=6e-22]} {Smed: dd_Smed_v6_12812_0_1, dd_Smed_v6_12812_0_1, [Score=213, Expect=7e-62]} {RNA1509_30200, RNA1509_51980} {RNA1310_10977.1, RNA1509_30200, RNA1509_51980} {RNA1509_30200, RNA1509_51980, RNA815_30620}
2.	MligTC455_50072	536	11.17	Mlig455_043235, Mlig455_043241	Neo: - Age: -		1.696	-	-	0.740	-	-	0.956	Mlig455_043235 {REF} {Length: 2717} {RNA1509_46424} {RNA1310_8905} {RNA815_3382.1} Mlig455_043241 {REF} {Length: 2387} {RNA1509_46424} {RNA1310_12565} {RNA815_3382.1}
3.	MligTC455_45656	349	7.26	Mlig455_001556	Neo: - Age: -	FBXO25	1.674	0.723	-	-	-	-	0.951	Mlig455_001556 {REF} {Length: 3220} {TRANSSPLICED} {Human: ENSG00000147364, FBXO25, F-box protein 25, [RH, Score=106, Expect=5e-25]; ENSG00000156804, FBXO32, F-box protein 32, [RH, Score=103, Expect=3e-24]} {Mouse: ENSMUSG00000038365, Fbxo25, F-box protein 25, [RH, Score=109, Expect=2e-26]} {Dmel: FBgn0036196, CG11658, [RH, Score=124, Expect=5e-32]} {Celegans: WBGene00008439, mfb-1, MAFBx (F-box) protein homolog, [RH, Score=118, Expect=1e-29]} {Smed: dd_Smed_v6_11888_0_1, dd_Smed_v6_11888_0_1, [RH, Score=200, Expect=7e-61]} {RNA1509_30284} {RNA1310_25700, RNA1509_30284} {RNA1509_30284, RNA815_623.1}
4.	MligTC455_30093	165	3.43	Mlig455_006983	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.588		0.975	-	-	-	-	-	0.975	Mlig455_006983 {REF} {Length: 1958} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=60.6]; Uncharacterised protein family (UPF0172) [PF03665.15, score=18.8]} {RNA1509_55534} {RNA1310_1280.1} {RNA815_6392}